Basic Information

Insect: Caradrina clavipalpis
Gene Symbol: -
Assembly: GCA_932526535.1
Location: OW052100.1:12732012-12742115[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.46 29 5.6 0.2 3 23 113 133 111 133 0.96

2 17 0.0031 0.2 12.4 0.2 2 23 137 159 136 159 0.95

3 17 0.011 0.71 10.7 0.4 2 23 391 413 390 413 0.95

4 17 0.11 7.2 7.5 0.4 1 20 421 440 421 442 0.94

5 17 0.067 4.3 8.2 0.6 2 23 452 473 451 473 0.93

6 17 0.21 13 6.6 2.8 1 23 521 544 521 544 0.94

7 17 0.46 29 5.6 0.1 2 23 621 643 620 643 0.85

8 17 8.5 5.4e+02 1.6 2.1 1 23 648 671 648 671 0.92

9 17 6.8e-05 0.0044 17.6 1.2 1 23 677 699 677 699 0.96

10 17 0.00034 0.022 15.4 1.7 1 23 706 728 706 728 0.98

11 17 8.7e-05 0.0055 17.3 2.3 1 23 733 755 733 755 0.96

12 17 0.00066 0.042 14.5 1.9 1 23 761 783 761 783 0.98

13 17 4.9e-07 3.1e-05 24.4 1.9 1 23 789 811 789 811 0.98

14 17 0.001 0.067 13.9 1.7 2 23 818 839 818 839 0.97

15 17 0.00074 0.048 14.4 0.5 2 23 847 869 846 869 0.97

16 17 2.8e-05 0.0018 18.8 0.5 1 23 874 896 874 896 0.97

17 17 0.0021 0.14 12.9 1.6 2 23 903 925 902 925 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.46	29	5.6	0.2	3	23	113	133	111	133	0.96
2	17	0.0031	0.2	12.4	0.2	2	23	137	159	136	159	0.95
3	17	0.011	0.71	10.7	0.4	2	23	391	413	390	413	0.95
4	17	0.11	7.2	7.5	0.4	1	20	421	440	421	442	0.94
5	17	0.067	4.3	8.2	0.6	2	23	452	473	451	473	0.93
6	17	0.21	13	6.6	2.8	1	23	521	544	521	544	0.94
7	17	0.46	29	5.6	0.1	2	23	621	643	620	643	0.85
8	17	8.5	5.4e+02	1.6	2.1	1	23	648	671	648	671	0.92
9	17	6.8e-05	0.0044	17.6	1.2	1	23	677	699	677	699	0.96
10	17	0.00034	0.022	15.4	1.7	1	23	706	728	706	728	0.98
11	17	8.7e-05	0.0055	17.3	2.3	1	23	733	755	733	755	0.96
12	17	0.00066	0.042	14.5	1.9	1	23	761	783	761	783	0.98
13	17	4.9e-07	3.1e-05	24.4	1.9	1	23	789	811	789	811	0.98
14	17	0.001	0.067	13.9	1.7	2	23	818	839	818	839	0.97
15	17	0.00074	0.048	14.4	0.5	2	23	847	869	846	869	0.97
16	17	2.8e-05	0.0018	18.8	0.5	1	23	874	896	874	896	0.97
17	17	0.0021	0.14	12.9	1.6	2	23	903	925	902	925	0.96

Sequence Information

Coding Sequence: ATGTCTTCGGATGAGTCAGATGATGAACCGCTATCCGTTATAGCGGCAAATAAAAAAGTAGGATCGGAACAATATGAGGAGGTATCGTCAGACTCTTTGGAATCTCCAACTAAGAAGAAAAAGAGATTACCACCACCTAAACGGTTCTCGATCACGATAAAGCTTCAAAAGAAGAGGGCTGCTCAGCAACCCGTGGTTGAGCGGCCGGCTGACGTGTGGCTCTACCTGAAAGATCTCAATCCTTCCGGACCCTACAGTTGCTTACTTTGCTCAGACTGGTTCATAAACAGATCTAAAATGATTGTTCACTACGTCCTTAACCATAAGAAAGACTTCTGTAGTATTTGTAGATACTTTGTACCTGATAGAGAATCTTGGGTGAAACATGTGCAGTATCATACTCCTTGGCCTTGCTCACAATGTGTTGAGAACTTTAAAACGGAAGTAGACCTCCGGGATCATCTCAAGTCTCAGCACAACCTCATACATTGCAGACTCTGTCATTTCCGTGTACTCGATGGTGATCTGTACCACACACATTTGTTCCAAAAACACAATGTCTCAAATATTTTAAATAAAGATGAAGAAAATCTTTGGGAATTTGAATATGATGGTACTTCTAACTTTTTATGTTCACTTTGTAACAGATCTAATAACTCCACTAGAACATTCTTTAACCACTACATGGGGTATCACCATTTCACTCTGAAATGTTTCACTGCTCTCTTGTCTGGAAGAGACACTCCATTCTTAATGTATGGAGCTGATGTTAGAGCAGAATTTGTTGAAGGGCAACTGAAACAGCATGAACGATTTGGCTATGTCGATTCTGAATTCAAATCTGGTGACAATGCTATAGAAACTGATCCAAATGAAACTAGAGACCTACTTAAAGTTCTCTTACCAGAAATAAAAGAAGAAGTGGTAACAGCTGATGAAGGTAAGAGCGATGATGACACTGCGAAGACAAAAGATGATGAAAATGATGATGTTTATAAAAACTACAACGGTATTGATGACTTTGATGTTACTTTATTGGAGCTGATAGTCATACAGAAATGTTACTATGATTATATCAGTGACGTATTGTCAGATATTAATGCGTGTTCATTTTTTGAATACTCCGATATTGATTATGATAAACTGACAATGGAAATCCCGATGGATATAGTGTGCACACTGTGCAGTGTCCGATACAGTACGCTGGCAACGTTTACTGCTCACATGTTCAAAATGCACTGTATAAAGTCCTCTCATATCTTTTCATGTAGAGTGTGCGCCACACCTTTTGAGACTCAACATGAGCTTGATAACCATACATCAAATGAGTTGAGGGACTTTGAAGACCTGTGGATCTGTCAGTTTTGTGATAAGGAGTTTGATGACAGGGAGACCTCAAGGCGGCATCTAACGGAACATTGGGAACAGGCTGAATATGACAACTGTTTCAGTCCACATTTAGGTTTCAAATGTCGGTATTGTCCGACCCTGTTTTGGCATGAGACGGACCGAGAGACTCATCAAGTGCGGGCACATATGTTAAACCATAAAGATGCCTATTACAAGTGTGAGAGTTGCAATGATGTCTTCAGTGATAAGgtgtGGTACGTCCACCACCACCTAGAAAAGCACTGCACTCCTGACAAGGTCCCTCTGTACCTCCTCAAGTGCACCCTCTGCTGCATAGTGATGTCAAGCATCGAGGAGATGAGAGGGCACTTCAACTGTGAACACCCTGAGGCTAGGAAAGTGTTCTGTTCATTGGATTCCTGTCAATACAAGCCTTTGAGTCATAGGAAATCTTTCAAGCTGCATGTGCGGTCCATGCACTCATCTCGGTCCCGCCCCGAGCGCGCGGTGGAGTGCCCCGCGTGCGGGCGCGAGTTCAACAGCTCGCGCGCGTGCGGCGCGCACATGGCGCAGGCGCACGGGCCCGGCAAGTTCAAGTGCAAGCTCTGCAGGGAAATACTGCATACTACTGATGAGAGGAAACTCCACTACCTAATAAGTCACCCCGGCCAGCATCCGTTCGAGTGCGGTGAGTGCGGCAAGTCGTTCCAGTACAAGTCCTCGCTGTACATGCACAAGCAGGACCACCTGCCTAACAAGCAGAACTTCACCTGCTCATACTGCGGGAAGACTTTCTTGAAACGCGACTCGTTCCGCGAGCACGTGCAAATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGGTTCGTGCAGCGCTCCAACATGCTGCGTCACGAGCGGCGCCACACCGGCGAGCGCCCGTACGCCTGCGTGCACTGCCCGCGGACCTTCGCTGATAAGGGCGCCTGTAATACACATATCAGGACCCACTTGAAGACCACGTCGTACGCGTGTATGTACTGCGGCAAGACGTTCGTTCAGAAGTCCAAGCTCACTTACCACATCAGGAAACATACGGGAGAGAACCTAGAGACATGCGCGGTATGCTCTAAGCTGTTCACCAGCGCGTGTTCGCTGCGTGAACACATGAAGATACACGAACCTAAGAAGGGGCAAGTTAAGTGTCCACTGTGTGATCGCATGTATCAAGACGAGCGGTACATGCTACGTCACCTCCGTACCTCACACACACAGGCGCGCCACCCGTGCCCTATATGCAACAAGACGCTGACCAGCCCCGCAGGGCTTCGCCACCATGTCATTACTCACAGCAATTTGAAAACCATCAGGTGTAAAATGTGTCCAAAAGCGTACTCAGTGAAAAGAACAATGATCAAACACTTCCGTCGTCGACACGGTTTCAAAGGTACTGAGCCGAACTTAAAGGATTTCTACACAAGATTGGACCCTAGAGAGTGTAACCTAGGTCTCGATGAACCTATTATGATCAGCATATTCGGTCCGCCTAAAAAGAAACCCATGAACGAACTCTTAGTAGCAGAATACGTTACTATAACCAACTTAGAACAGCGAAACCAAACACAAGAATCAGAACAAGGGGTCCCAATTGCAGAAAATCCTCAAAACGCACAAAATGAGAAGTCTCAGAACGAAGGACAATCGGGAGAGAGTGAGAACGCCACTGAAGGAGGAATTGTTATAAAAATTGAAGCTAAAGATCCGTGCGAACAAAATGTTGTGATAGACCTGGAACCCACTGATTATGTTAGCGTTAAAATTGAACCAATGGATGACAGTCATGGGGATGACTAG
Protein Sequence: MSSDESDDEPLSVIAANKKVGSEQYEEVSSDSLESPTKKKKRLPPPKRFSITIKLQKKRAAQQPVVERPADVWLYLKDLNPSGPYSCLLCSDWFINRSKMIVHYVLNHKKDFCSICRYFVPDRESWVKHVQYHTPWPCSQCVENFKTEVDLRDHLKSQHNLIHCRLCHFRVLDGDLYHTHLFQKHNVSNILNKDEENLWEFEYDGTSNFLCSLCNRSNNSTRTFFNHYMGYHHFTLKCFTALLSGRDTPFLMYGADVRAEFVEGQLKQHERFGYVDSEFKSGDNAIETDPNETRDLLKVLLPEIKEEVVTADEGKSDDDTAKTKDDENDDVYKNYNGIDDFDVTLLELIVIQKCYYDYISDVLSDINACSFFEYSDIDYDKLTMEIPMDIVCTLCSVRYSTLATFTAHMFKMHCIKSSHIFSCRVCATPFETQHELDNHTSNELRDFEDLWICQFCDKEFDDRETSRRHLTEHWEQAEYDNCFSPHLGFKCRYCPTLFWHETDRETHQVRAHMLNHKDAYYKCESCNDVFSDKVWYVHHHLEKHCTPDKVPLYLLKCTLCCIVMSSIEEMRGHFNCEHPEARKVFCSLDSCQYKPLSHRKSFKLHVRSMHSSRSRPERAVECPACGREFNSSRACGAHMAQAHGPGKFKCKLCREILHTTDERKLHYLISHPGQHPFECGECGKSFQYKSSLYMHKQDHLPNKQNFTCSYCGKTFLKRDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACVHCPRTFADKGACNTHIRTHLKTTSYACMYCGKTFVQKSKLTYHIRKHTGENLETCAVCSKLFTSACSLREHMKIHEPKKGQVKCPLCDRMYQDERYMLRHLRTSHTQARHPCPICNKTLTSPAGLRHHVITHSNLKTIRCKMCPKAYSVKRTMIKHFRRRHGFKGTEPNLKDFYTRLDPRECNLGLDEPIMISIFGPPKKKPMNELLVAEYVTITNLEQRNQTQESEQGVPIAENPQNAQNEKSQNEGQSGESENATEGGIVIKIEAKDPCEQNVVIDLEPTDYVSVKIEPMDDSHGDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00758517;
90% Identity: iTF_00274676;
80% Identity: -