Ccla010104.1
Basic Information
- Insect
- Caradrina clavipalpis
- Gene Symbol
- -
- Assembly
- GCA_932526535.1
- Location
- OW052100.1:3416402-3432308[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0021 0.14 12.9 2.6 3 23 241 261 239 261 0.97 2 11 0.15 9.8 7.1 9.4 1 23 267 289 267 289 0.95 3 11 0.00027 0.017 15.8 8.5 1 23 295 317 295 317 0.98 4 11 0.00041 0.026 15.2 1.5 1 23 323 345 323 345 0.97 5 11 8.5e-06 0.00054 20.5 0.9 1 23 351 373 351 373 0.97 6 11 1.9e-06 0.00012 22.6 0.1 1 23 379 401 379 401 0.98 7 11 6.6e-05 0.0042 17.7 0.4 1 23 406 428 406 428 0.96 8 11 0.63 40 5.2 3.6 3 19 436 452 435 458 0.90 9 11 3.2e-05 0.0021 18.6 0.4 1 23 556 578 556 578 0.97 10 11 0.0015 0.096 13.4 2.0 1 23 641 663 641 663 0.96 11 11 3.5e-05 0.0022 18.6 4.3 1 23 673 695 673 695 0.97
Sequence Information
- Coding Sequence
- ATGTGTATGCCAACTCCTAACAATGTTTCGGGCTTCGGTTACTCGTGGGGCTTCACGAGTTCTGCGGACCTTACAAAGGGTGAAGTGGAAACACCGAGTAGCTTGAGTTATACCCTGGGAAACACGGTTTCACCAGAGACAACACTGACTGTTATGTCCCACAAAACACCACAAGTGCAAGAAAAAGTCGGAGCAGTCACAGTAGCGGTGTCAAATGCAGGTGCACAGCTAACACGGGTTGTTACTACGGGCACACCAGTCTCTGGAAGACGGATGTTTGTTGTGAATGATGCGGCTCATACGCTGAACAGGGTGTCGCAGCAGAATCAAACCACTACTATACATACGAACTTAGCAGCTAAGCCGTTTATGACACCGATAGGTCCCATCCAGTTAACTGCGGAAGAATGCAACGAGATATTGATGAAGAGGGCCCTGCAGGCTCAAGGCATCGCGACTCCGGTGATAGACGCATCGCAACTCAACCACACGATATTAAACGGGGGCTTGAAGAGTCTGGCGGAGGCGACGGTACAGCAAACGCAGGCGGAGACCATTCAAACGACGACGGTACATCAGCATCACTTGTTACATACGAAGCAGGAGCCTGGCACTACTAATAATTCGCCTAAAGCGGTATATTCTCAGACGGAGCTGATGAACACCAACTCGGTGATGACGACAGCGCCACCTGCCACGGTCAAGGAGCGTCCTTACGGCTGCGACGAGTGCGGCAAGTCCTTCCTCCTCAAACACCATCTAACGACGCACGCTAGAGTTCATACAGGTGAGCGACCGCACGCGTGCGTGCACTGCGCCAAGACATTTGCGCACAAGCATTGCCTCAACACCCATCTCTTACTGCACTCCACAAACCGCCCGTACCGCTGCCCCGAATGCAAGAAAACCTTCACGCTCAAACACCACCTTCACACTCATTCACGGGTGCACAGTCGAGAACGTCCATTTGTGTGCAACGAGTGCGGTCGCGGTTTCCCTCTGAAGCGCCACCTGGTGACGCACAGCAAGTACCACGCGGGCGAGCGGCCCTACGTCTGTAGTGATTGTGGAGAGAGCTTCGCGCAGAAGGAGCACCTAGTAATGCACAGCCGGTTCCACGGCTCGCTGTCTCCCTACGTGTGCCCCGACTGCGGCGTGACGTTCGCGCGCAAGTTCCAGCTCGTCAACCACGGCCGCGTGCACGGGAGGGTGCCGCACGCCTGTCCTGTCTGCGGGAAGGAGTTCCTGCAGAAGAGGACGCTGGTCGCGCATATGAAAATCCACACTGGAGAGGGTGCAGTCGCGTGCTTAGAATGCGGAGAGGCCTTCAAGTGCAAGTCAGAGTTGCAGCAACATTGCAAAATGACGCGGCACTGTCTACAATCATCGCAAGCACAGCAGCAACAGCAACAACAGCAGCAACAACAACAGCAACAGCAGCAGCAACAACAACAACAGCAACAACAACAAGCGCAACAACAAGCACAACAACAGGCGCAACAACAAGCACAGCAACAAGCGCAACAACAGCAACAACAACAACAGCAGCAGCAACAACAACAGCAACAAGCAACTGTGATAAAACAAGATGAATTTAAACCGCAAATTGTACAGGTGATCGGTGCAGACGGTCAAATAGTGACGACGGAGAAAACGACGCCGGGGTACGCGTGTCCAGAATGTGGTTCCTGTTTTAATACCAAGGAGGCGCTGTCGCTGCACGTGCGGCTGCACGCGGGCGACCGCACGTGCGTCACGGACCTGTGCGCGCTCACCGCCGCGCTGCAGCCCGGCCTCGTCGCCGCGCACACGCAGCACAATCAACCTAATATACAGATAATTTCCTCGAATTCAAATAACGTTGGGCATACGCAAGTGATAGCAGCGAATCATCAAATCTCGACTCCCAGACCGAAGGTTCACTTTTGTAACGACTGCGCAAAAGGGTTCGCGGCTAAACATGGCTTGTTGGCACATCAAAGAAGACATCCTGACGGCAGTTGTACACTACGTACGCACGTGTGCGATCAGTGCGGCAAAGCGTTCTTCCAGAAGAACCACCTAATGCTGCACCAGAGACAACACATGGACCTGCCGCCCAGAAGTGTAAGCAAATACCCTAACCTTTACGCCTCTGCTCCCGCCAAGAGTCAACCCGTAACGCAACAAGTCACGCAACAGGCAGTACAACAGGCGCAACAAGCGCAGCAGGTGCAACAACAGGTGCAACAGCAAGTGCAGCAACAGCAACAACATCAGCAACAGGTGCAGCATCAGAACAGTCTGGAGTTGGATCAGCAGGATCATCAGCAGGCCACGCATATACAAGTTGTAACGAACAGATCAGGCCAGGTGATCGGCAACCAGATAGTGGTGGGTTCGCTAGGCTCGCGTCGGCTGGTGGCGCCGCTGCACATCGTGGGGCGCGACATCAAGCCCACCATCGCGCATCTCGCGCACAAGCACCACGCCAGGCAGCATACCACCAGCGGCGACGCAAAAGAAGTAGGCGGGCTTGTCCTATCAGCAGGCAGAACAGGCCTCATCAAGTACGAGATCTCCCTCCCCCCACCCACGTCTGTCGTCCAGGTGCAACAGCTCGACTGA
- Protein Sequence
- MCMPTPNNVSGFGYSWGFTSSADLTKGEVETPSSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGAVTVAVSNAGAQLTRVVTTGTPVSGRRMFVVNDAAHTLNRVSQQNQTTTIHTNLAAKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTILNGGLKSLAEATVQQTQAETIQTTTVHQHHLLHTKQEPGTTNNSPKAVYSQTELMNTNSVMTTAPPATVKERPYGCDECGKSFLLKHHLTTHARVHTGERPHACVHCAKTFAHKHCLNTHLLLHSTNRPYRCPECKKTFTLKHHLHTHSRVHSRERPFVCNECGRGFPLKRHLVTHSKYHAGERPYVCSDCGESFAQKEHLVMHSRFHGSLSPYVCPDCGVTFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGAVACLECGEAFKCKSELQQHCKMTRHCLQSSQAQQQQQQQQQQQQQQQQQQQQQQQQQAQQQAQQQAQQQAQQQAQQQQQQQQQQQQQQQQATVIKQDEFKPQIVQVIGADGQIVTTEKTTPGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAHTQHNQPNIQIISSNSNNVGHTQVIAANHQISTPRPKVHFCNDCAKGFAAKHGLLAHQRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRSVSKYPNLYASAPAKSQPVTQQVTQQAVQQAQQAQQVQQQVQQQVQQQQQHQQQVQHQNSLELDQQDHQQATHIQVVTNRSGQVIGNQIVVGSLGSRRLVAPLHIVGRDIKPTIAHLAHKHHARQHTTSGDAKEVGGLVLSAGRTGLIKYEISLPPPTSVVQVQQLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01063076;
- 90% Identity
- iTF_01062106;
- 80% Identity
- -