Basic Information

Insect: Caradrina clavipalpis
Gene Symbol: ECU03_0790
Assembly: GCA_932526535.1
Location: OW052107.1:9019640-9025626[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00015 0.0096 16.5 1.6 1 22 50 71 50 71 0.96

2 13 0.00025 0.016 15.8 5.3 1 23 87 110 87 110 0.96

3 13 0.15 9.7 7.1 0.3 2 23 118 140 117 140 0.95

4 13 9.9e-06 0.00063 20.3 1.9 1 20 145 164 145 166 0.95

5 13 1.8e-06 0.00012 22.6 0.4 1 23 177 200 177 200 0.97

6 13 0.3 19 6.2 6.4 1 23 206 229 206 229 0.96

7 13 0.015 0.93 10.3 3.1 1 23 236 258 236 258 0.98

8 13 0.078 5 8.0 0.1 1 23 263 285 263 285 0.97

9 13 2.8e-06 0.00018 22.0 1.7 1 23 291 313 291 313 0.98

10 13 2e-05 0.0013 19.3 0.5 3 23 318 338 317 338 0.98

11 13 0.18 12 6.8 0.2 5 23 350 371 344 371 0.80

12 13 8e-05 0.0051 17.4 1.4 1 23 377 399 377 399 0.98

13 13 0.6 38 5.2 0.7 3 23 407 429 406 430 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00015	0.0096	16.5	1.6	1	22	50	71	50	71	0.96
2	13	0.00025	0.016	15.8	5.3	1	23	87	110	87	110	0.96
3	13	0.15	9.7	7.1	0.3	2	23	118	140	117	140	0.95
4	13	9.9e-06	0.00063	20.3	1.9	1	20	145	164	145	166	0.95
5	13	1.8e-06	0.00012	22.6	0.4	1	23	177	200	177	200	0.97
6	13	0.3	19	6.2	6.4	1	23	206	229	206	229	0.96
7	13	0.015	0.93	10.3	3.1	1	23	236	258	236	258	0.98
8	13	0.078	5	8.0	0.1	1	23	263	285	263	285	0.97
9	13	2.8e-06	0.00018	22.0	1.7	1	23	291	313	291	313	0.98
10	13	2e-05	0.0013	19.3	0.5	3	23	318	338	317	338	0.98
11	13	0.18	12	6.8	0.2	5	23	350	371	344	371	0.80
12	13	8e-05	0.0051	17.4	1.4	1	23	377	399	377	399	0.98
13	13	0.6	38	5.2	0.7	3	23	407	429	406	430	0.81

Sequence Information

Coding Sequence: ATGCCACCTAAACGAAAGAAGTTAGGGCGACCGCCTGGGCCCAAAAGTAAGAAAAGGAAAACGTCTAACAAAAATGTTGTGAAAAAGGATTCTGTTGTGGTATTGAAGAAGGAAAAAGATAAAATAACTTGTCCTCCAGATGTTGAATACGTCTGTAATGTTTGCAATAAGAATTTCAAGACAGGAAGAGAATTATTGAAACATCACAGACGATGTCGCGCTTTAGAATATTCTGAGATGGTTATTTCGAGGGCAGCATACAGTTGTAAAGAATGTCCTAAAAAGTTCAGGTTCAAGAAAACCTTTACAGAGCATATGCACAACGAACACTCCAAGCTACCAAACAGTGTTTCTTGTGATCAGTGCAATGTCTCTTGCCCAAATAAGGAAATTCTGATCGAGCACATCAAGAATGTTCATGAAAGAGATATTTTTTCATGTCCTCACTGCAAGCGAACATTTGTCCGCCGGTCACATGTGCTTCGGCATATGGCACAGAGTGGATGTGACGGACATGGAGTTGCCTCATTTAGTTGTGAAATTTGCAGTGCAAAATTTTCCAGAAAAGACAATTTAATGGTCCACATAAGGCTGCAGCATATTATAAAAGATGGTTTCTATTGCAAGCACTGTCTATATTCAACAAAGAATTTTTCCAAATTGGTTAACCATTGGCACAAAGAACATGCAGAAACACGTGATCAATATCAATGTCACCATTGTAGCAAGTGGACGAGCTCCAGAGCCGCCATGACCAAACACCTTGAGATACATGGCGAGAAGAAGTATGCATGTGGTGTGTGCGGCTACAGCACGTTCACGATCGAGGTGATGCGCCGGCACGCGCTCACGCACGTCAAGGAGAAGCCGTACAAGTGCTCGCTGTGCAACAAGTCGTACATACAGCGCGTGCAACTGCAGCGCCATCTCGAGAAGCACACCGGCAACCTGTGCAGCAAGTGCGGCGAAACATTCTCCACTAGAGCCAGGTTGTTGATACACATGAGAGAGCATATGGGATTAGAGAAATTATATTGCCCCCTATCAACATGTACTTACTCAACAAAAGAGTTCATCAGTGAGGCCAGTTTGAATAATCATTTGAAAGTGCATTTAGAAGACAAGCCGTACAGTTGCGAGGTGTGCGCCAAGACGTTCCACTCGGACGTGAACCTGCGGCGGCACCTGGAGACGCACACGCTGGACCGGCCGCGGCGCTGCATGTACTGCGTGTCGGCGCGCGCCTACGTGCGCGGCGAGCAGCTCATCCGCCACGTGCGCAAGCACCACCCCGTCGTCTTCAAGGGCCACCTGCTGCACGTGCGCACCGTGCTTGGCACCAATAATTCAATGGAAAGAGTAAAGAAGTCTGAAATAGAATCAATACTTAACCTGTTAGATGTGGAGTCGGATCGCATTCTGCAAGGATACAGCGGGGCGGGCGTGCTCTACGGCGGCATGCAAGACGATCAGAGCAGCTCCAGTAGCGAACTACAGAATAAGAAAGGGAATGTCGCCCTGATGTCGGAGGAAGAACTCACAGAGAATTTGAGAATGTTACTTGCGCAGCTTATTGACGAGGAGACACTCGACTTATTTGGTTGGCCTGACGAGAGTGTAGACGTGatattagaaaaagtgatcgagcagtgtggtgccaagccggcggaccgcgagaagtggacgcgcgtgcagcgcctgcgcgagaactccaagcatttgtttttatacgttatcgaagacaagaacatcgcgcgcatgctcgacacgcacactatagatcaaatcgtcaaacatatactcaaacaagtcagcgaAGATGATACCAAGGAAAGTGTCTAG
Protein Sequence: MPPKRKKLGRPPGPKSKKRKTSNKNVVKKDSVVVLKKEKDKITCPPDVEYVCNVCNKNFKTGRELLKHHRRCRALEYSEMVISRAAYSCKECPKKFRFKKTFTEHMHNEHSKLPNSVSCDQCNVSCPNKEILIEHIKNVHERDIFSCPHCKRTFVRRSHVLRHMAQSGCDGHGVASFSCEICSAKFSRKDNLMVHIRLQHIIKDGFYCKHCLYSTKNFSKLVNHWHKEHAETRDQYQCHHCSKWTSSRAAMTKHLEIHGEKKYACGVCGYSTFTIEVMRRHALTHVKEKPYKCSLCNKSYIQRVQLQRHLEKHTGNLCSKCGETFSTRARLLIHMREHMGLEKLYCPLSTCTYSTKEFISEASLNNHLKVHLEDKPYSCEVCAKTFHSDVNLRRHLETHTLDRPRRCMYCVSARAYVRGEQLIRHVRKHHPVVFKGHLLHVRTVLGTNNSMERVKKSEIESILNLLDVESDRILQGYSGAGVLYGGMQDDQSSSSSELQNKKGNVALMSEEELTENLRMLLAQLIDEETLDLFGWPDESVDVILEKVIEQCGAKPADREKWTRVQRLRENSKHLFLYVIEDKNIARMLDTHTIDQIVKHILKQVSEDDTKESV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01026611;
90% Identity: iTF_00274637; iTF_00809420; iTF_00810344;
80% Identity: -