Basic Information

Insect: Caradrina clavipalpis
Gene Symbol: -
Assembly: GCA_932526535.1
Location: OW052091.1:2574766-2584381[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 8.7 5.6e+02 1.6 0.8 2 19 266 283 265 287 0.72

2 13 0.00067 0.043 14.5 2.4 1 22 292 313 292 316 0.92

3 13 0.0015 0.094 13.4 2.9 2 23 445 467 444 467 0.94

4 13 0.0013 0.085 13.6 0.0 1 23 473 495 473 495 0.96

5 13 0.029 1.8 9.4 0.2 1 23 505 528 505 528 0.88

6 13 2.3e-07 1.5e-05 25.4 3.5 1 23 533 555 533 555 0.98

7 13 0.00033 0.021 15.5 0.9 1 23 561 583 561 583 0.95

8 13 0.00011 0.0069 17.0 4.9 1 23 589 611 589 611 0.98

9 13 1.1e-07 6.9e-06 26.4 0.4 1 23 617 639 617 639 0.98

10 13 0.0023 0.14 12.8 4.3 1 23 645 667 645 667 0.98

11 13 0.00016 0.01 16.5 0.1 1 22 673 694 673 694 0.95

12 13 6.4e-05 0.0041 17.7 0.8 1 23 701 723 701 723 0.98

13 13 4.3e-06 0.00028 21.4 3.8 1 23 729 752 729 752 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	8.7	5.6e+02	1.6	0.8	2	19	266	283	265	287	0.72
2	13	0.00067	0.043	14.5	2.4	1	22	292	313	292	316	0.92
3	13	0.0015	0.094	13.4	2.9	2	23	445	467	444	467	0.94
4	13	0.0013	0.085	13.6	0.0	1	23	473	495	473	495	0.96
5	13	0.029	1.8	9.4	0.2	1	23	505	528	505	528	0.88
6	13	2.3e-07	1.5e-05	25.4	3.5	1	23	533	555	533	555	0.98
7	13	0.00033	0.021	15.5	0.9	1	23	561	583	561	583	0.95
8	13	0.00011	0.0069	17.0	4.9	1	23	589	611	589	611	0.98
9	13	1.1e-07	6.9e-06	26.4	0.4	1	23	617	639	617	639	0.98
10	13	0.0023	0.14	12.8	4.3	1	23	645	667	645	667	0.98
11	13	0.00016	0.01	16.5	0.1	1	22	673	694	673	694	0.95
12	13	6.4e-05	0.0041	17.7	0.8	1	23	701	723	701	723	0.98
13	13	4.3e-06	0.00028	21.4	3.8	1	23	729	752	729	752	0.96

Sequence Information

Coding Sequence: ATGGAAGTAGTTCTTTACAATTCTAATGTTTGTCGATTATGTGGAGAAGAAAATGATAATGGAAACTTGTTATATTCGTGTGAAATAAATAGTCAAAACTTAAGTGATGTAATTAACACATATTTGCCAATCAAGGTTACTGATGATGGGCAACTGCCTCGTACCATTTGTCCAGGATGCACCATACAACTGGAGGCCACCGTAGAATTTCTAACGCTGATAATAAACGGACAAAAAGTGATACGAGAACTTCATCTCAGAGAGAAAGAATACAAAAGAACCGTACTAGATCCTCCTACTGAACAGGAAGTTGTAACACAGAAGATTATTTATGAAGTTAATACTAGCGATGGAGTGTACCAAGTCGAACACCCCATATCCCTACAAGTTGCTGGTCTGGAAAAGCCAAAACGCAAACGAGGCAGGCCTCCTAAAAAGCCCAAAACTCCTGAGGAGTTAGCCAGGGAAGCTGCCGCAAAGGAACAAGAGGTGAAACAAGCTAAAAGACAAGATAAAGAAGTTGAACCGACTGGGAAACGTAGGAGGAAAACTCCGACAAGGTTTAGAGAAGCTGTTCAGGGTAAAGAGCTTGAGAGGATATTCAAAGAAGAAGGAGTAATAGACGGAGATGACAGTGAACCAGAGGTGAAGGTAGAACACAACCTAGACATGAAGCTGCCCGCGTCTAAAGAACCAGAAGTCATCGGCCACCTGGAGGATTCCGGAGAACTGGTTGTGGTGGTCAAGGGTAAGGGGCGCGGGAGGCCTAAAGGACCGATGACCCCAACCCGCAAAGAATGCGCTATTTGCGGCATGGAGTTCACATGTACTGGTCGTTACATGTCGCATGTGGCTCAACACGGGCCAGTCCTGTACCAGTGTGGCCAATGTTCCGAGACCTTTACTACGAGGTTACACTTCAACAACCACCAGAAAGAACTCGGGCATACTGGACAGAATATTATACCATGCAAGAAGAATGTTGAGAGGATTAGGGCTAAGAAAGCTGATAAACCAGTAACTGAAACTATAGTAATACCAGACGACTCTCAGCCTCAACCAATAAAATCTGATTCTGTACAAATATTAGAGGATGTAATATTACCCATAACAACATCTTTACCGGATTTAAATCCTCAACCGATTGTAGTTGACGACAATGTCAATGGGACAGAGTTTTTAAAGACTCAAAGCCCAGCCATTGAGATTGCATCTAGTCCTAGTGTTGATAATGATGCCAAAATTGATGAGTCGCCCACAGATGTCACTGTGACAGAGAAGTCAGATGATGTGGAACAAGTAGCAACTACTCCGTCTGGTAAACCAAGGCTGAAGTGTAACCACTGTGACAAGACGTTCGCTAGCAAACAGAGCAAGTCTTTGCATATCAAGGCAACACATCAAGGCGAGCGTCCGTACGTGTGCGGCGAGTGCGGCGCACGGTTCGCGTACCCGCGCTCGCTCGCGTTACACACCGTGTCGCACCGACGACACCGCGGGGCTTCTAAGGGCTTCGCTTGTGATCTGTGTGGAAAGGTCCTAAACCACCCATCATCCGTGGTGTACCACAAGGAAGCGGAGCACGCAGGTCAGCGGTACGTGTGCAACAAGTGCGGCAAGTCGTTCAAACACAAGCAGTTGCTGCAACGACATCAACTCGTGCACTCACAAGATAGGCCTTATAACTGTAAGTTATGCAGCGCCTCATTCAAGACGAAGGCGAACCTGCTGAACCACTCGCTCTTACACACCGGGGTCAAGAAGTTCTCGTGTGAGATATGCAAGCACAAGTTCGCACACAAGACTAGTCTAACGTTGCATATGAGGTGGCATACTGGGCAAAAACCCTACTCATGCAACGTATGCGGCAAGAGCTTCAGCCAGAAGGGCAACCTGTCGGAACACGAGCGCATCCACACCGGAGAGAAGCCGTTCCAGTGTTCCATGTGCCCGCGCAAGTTCACCACCTCCAGCCAGCACCGGCTGCACGCCCGGCGACACAACTCCGACAGACCGTTCGTCTGTGCGCATTGTGGGAAGAGGTTCGTGTCGCGCGGGTCGTGGGCGGCGCACGTGCGTCGCGAGGGCGGGGGCCGCACGCACCGCTGCGGCGAGTGCGGGCGCACGTTCGCCGAGCGCTGGCCGCTGCTCAAGCACCTGCGCAAGCACTCCGGCGAGCGGCCCTTCAAGTGCCCGCACTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTTAATAAGCATAAGAAGCAAGTCCACAAGCAGATCAGCTTGCTCGCGAACACGAACCTAACGCCGGTACCTTCGCCTATACCTCTGAAGATAGAGCAGCCCGATTCACCGCACATACAGCTAGAGGAGCAGACGGTCATCCCGGAGACGCCGCCCGGCAAGCTTCTGGAGCACGCGGCTGATGATGAGCTGGAGGAACGCGTTATATACGTGACGTATGATGTGGATGATGCTGAGTCGCCTGCCTTCCATATACTGGACCCTCATGAGGCGGCCACTCTAGAAGACAGCAAGGTGCTAACAACGTGCGAACTATACTCGGGCCCGTCCCTGCTGGTCCCGCAGCCCGAGTACGGGCAGCTTCAGCTGGAACACGAGCAATTAGAGCTGGAACACGAGCAGCTCGTACAGGAGGAGCTGCAGCAACTGCCTGAACAGCTGGTGTTGGAGGGACACGACCATAATATACCTGTAACTGATGAGCAGGGCAATCCACTACACTTCACCATGCAGGATGGCACACGACTCGCCATCACCTCTGCCGATGGCAAATCTTTACAAGTGATAACTCAAGATGGTCAAACCATTCCTGTTGAGATTAACGGATACGCAGATGAAGAGGAAGTAGACAATCCGGACACTATAGTCCACCAGTTGAACCTACAAAAAACCATGGACTCAAATGTGTCATCTCCTGTCACACATTACTTTACTATTGTTTAA
Protein Sequence: MEVVLYNSNVCRLCGEENDNGNLLYSCEINSQNLSDVINTYLPIKVTDDGQLPRTICPGCTIQLEATVEFLTLIINGQKVIRELHLREKEYKRTVLDPPTEQEVVTQKIIYEVNTSDGVYQVEHPISLQVAGLEKPKRKRGRPPKKPKTPEELAREAAAKEQEVKQAKRQDKEVEPTGKRRRKTPTRFREAVQGKELERIFKEEGVIDGDDSEPEVKVEHNLDMKLPASKEPEVIGHLEDSGELVVVVKGKGRGRPKGPMTPTRKECAICGMEFTCTGRYMSHVAQHGPVLYQCGQCSETFTTRLHFNNHQKELGHTGQNIIPCKKNVERIRAKKADKPVTETIVIPDDSQPQPIKSDSVQILEDVILPITTSLPDLNPQPIVVDDNVNGTEFLKTQSPAIEIASSPSVDNDAKIDESPTDVTVTEKSDDVEQVATTPSGKPRLKCNHCDKTFASKQSKSLHIKATHQGERPYVCGECGARFAYPRSLALHTVSHRRHRGASKGFACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHKQLLQRHQLVHSQDRPYNCKLCSASFKTKANLLNHSLLHTGVKKFSCEICKHKFAHKTSLTLHMRWHTGQKPYSCNVCGKSFSQKGNLSEHERIHTGEKPFQCSMCPRKFTTSSQHRLHARRHNSDRPFVCAHCGKRFVSRGSWAAHVRREGGGRTHRCGECGRTFAERWPLLKHLRKHSGERPFKCPHCPRAFADCSNLNKHKKQVHKQISLLANTNLTPVPSPIPLKIEQPDSPHIQLEEQTVIPETPPGKLLEHAADDELEERVIYVTYDVDDAESPAFHILDPHEAATLEDSKVLTTCELYSGPSLLVPQPEYGQLQLEHEQLELEHEQLVQEELQQLPEQLVLEGHDHNIPVTDEQGNPLHFTMQDGTRLAITSADGKSLQVITQDGQTIPVEINGYADEEEVDNPDTIVHQLNLQKTMDSNVSSPVTHYFTIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00785426;
90% Identity: iTF_00274629;
80% Identity: -