Ccla002073.1
Basic Information
- Insect
- Caradrina clavipalpis
- Gene Symbol
- -
- Assembly
- GCA_932526535.1
- Location
- OW052089.1:3325256-3333290[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 5e-05 0.0032 18.1 2.4 1 23 202 224 202 224 0.98 2 29 0.00053 0.034 14.8 1.2 2 20 253 271 252 273 0.92 3 29 0.00051 0.033 14.9 0.2 2 23 303 325 302 325 0.96 4 29 0.00063 0.04 14.6 1.5 1 23 375 398 375 398 0.97 5 29 0.067 4.2 8.2 0.3 1 23 417 439 417 439 0.95 6 29 5.8e-06 0.00037 21.0 1.8 1 23 479 502 479 502 0.97 7 29 0.0016 0.11 13.3 4.1 2 23 542 564 542 564 0.97 8 29 0.00058 0.037 14.7 0.5 1 23 614 637 614 637 0.97 9 29 0.017 1.1 10.1 0.1 1 23 689 711 689 711 0.97 10 29 0.00015 0.0095 16.6 5.3 1 23 722 744 722 744 0.98 11 29 0.051 3.2 8.6 0.6 2 23 756 777 755 777 0.95 12 29 0.0028 0.18 12.6 1.4 1 23 787 809 787 809 0.98 13 29 0.0045 0.29 11.9 4.1 1 23 838 860 838 860 0.96 14 29 0.003 0.19 12.4 2.8 1 23 871 893 871 893 0.97 15 29 6.9e-06 0.00044 20.8 2.1 1 23 901 923 901 923 0.98 16 29 0.00062 0.04 14.6 0.2 2 23 943 965 942 965 0.97 17 29 0.98 63 4.5 0.3 1 23 983 1005 983 1005 0.90 18 29 0.14 8.7 7.3 4.0 1 23 1012 1034 1012 1034 0.95 19 29 0.0038 0.24 12.1 3.9 2 23 1045 1067 1044 1067 0.95 20 29 0.014 0.89 10.4 0.2 2 23 1090 1111 1089 1111 0.95 21 29 1.3 82 4.2 3.6 2 23 1154 1176 1153 1176 0.95 22 29 0.002 0.13 13.0 0.2 2 23 1192 1213 1191 1213 0.95 23 29 0.96 61 4.6 1.0 5 23 1223 1241 1220 1241 0.92 24 29 0.0088 0.56 11.0 0.7 2 23 1252 1274 1251 1274 0.95 25 29 0.18 12 6.8 3.3 2 23 1291 1309 1291 1309 0.90 26 29 0.96 61 4.6 1.6 2 21 1313 1332 1312 1333 0.93 27 29 0.21 14 6.6 0.4 2 23 1382 1403 1381 1403 0.93 28 29 0.003 0.19 12.5 0.5 2 23 1414 1436 1413 1436 0.95 29 29 1.6 99 3.9 1.2 2 21 1474 1493 1473 1494 0.92
Sequence Information
- Coding Sequence
- ATGGCCCTCAAGCTTGGAAAATGCAGGCTCTGCCTCAAGCTCGGCGACTTTTATTCCATCTTCACGATCGACAATGCTTTGCAGCTCGCGGAGATGGCAATGGAATGCGCCCGGGTGAAAATATACGAAGGCGACGGGCTGCCTGACAAGGTGTGCTCCGAGTGCATTCAGAAGCTCAGCAGTGCGCACATTTTCAAACAACAATGTGAGCGAGCTGATCAGGAGCTACGCCGCAACTATGTGCCTCCACCGGGATTCAGCATCAGTCCACCTCCACCCAACAGACAGAGCAGCGATTCCGCCTTTTCAAATCACACAGATACCTCCATCTTGACCAAACCCCCGTCTTCCATCGAAGAGAAAGTTACTCCCGCCACCAGGACGCGGAAACGTAGTGCGGAGAGCGTCGGCAACGCATCCACTGGTGGCGTATCAAGCGACTATAGACCTAGTTGCTCCAAACGCATCCAGGAGCTGAGGCGCAGCCACAAGAGACCCAGAAGACTATCAGGCAACAACTCCCTGTTCGATTCAGATTACGAAGACAATGGCGGCTCGTTCTTAGCCGAAACAGATTCCGACGAGCCCTTACTTAAGAATAGCTTCAATTGCGAACAGTGTCCCAAACATTTCACATCTCAAAAGAGTCTCGCTATCCACAAGAGGATACACAACAAAAAGGAAAGTCTTGGCGAAAACGCCGTCGTTAATATACCGCAGAAGACAGACGATGCGACTGACGACGACGAAAAACTGAACTGCAACAAATGTGGGAAGACATTCAAGTTAAAGATCATGTTGAAACGCCACCATGAAATATGCGGGAAGACTGTAAAACCTGCAAATATGGAGAAACAGTTGCTCATCTCCTTAGAACCGATCGACGGCATGCAGAACCGGAATATTGTGTGTGAACTGTGCTCGTCCAAGTTCAAGACAGTTGACAATTTGGCAAAGCATATGAAGGTGGTTCATGCTGCAGTCTTAAAAAAGGAAAATCTTGAAAAACTAGAAAACGGCAAGGTGTCCGTCCCGTGCATGTTCTGCCACGAGTGTTTCGACGATTATTACGTTCACAGTGCACATTTCCACTCGTGTTCGAAAAGAGATAACTCTGTGCCCTATAAGTGTCCACTTTGTAAGAAGATATTGTCGAGGAAGAGTACGTATTTATTACATCTTAAGAATATGCACTTTGAGCCTCGGATGTCGGCGAAGAGCTCAGAGGAGCCTGAGGCGCAGGAGTACCACGAGTGTAGAATGTGCTACAAGAAGCTGCCCTCGCAGGCGTTGCTGATCACGCACCTAGCGGCGCACGTGTCCAACATCGACGACAACGACGGTGGAGCCGACAACGAGTCTAGAGCAAGCACCTTAGACGACGATGCGTCCATCCGATCAGTCCATAGCCAGTCTAATACTCCCACCAATATATATAAATGCCCAACATGTGGCAAAGAGTTCAAATACAATGGGGCTCTCCAATCGCACCAGGCGCGGTGTCATTCAGAAGTACCTGTGGAAGTGAAGTTTGAACCGCCTGATAAGGCATCTACGAGTCTCTTGAGCGAGACGGCCTATAAGCAGACTGAGTCAGAATCTAGTCAAGAAGAAGACGATAACACGTGTGATATCTGCGAGAAGCAGTTTTCGTATCGGCGGCTCCTCCTGCACCACAAGAGGACCAAACACAACATGAGCTCGGGACACAAACGCGCCAAAATCTACCTTAAAGACTGCTCCGTGCGCTGCCTCATCTGCGACATCGACATGAAGGTCGGAGTGATCAACGAACACAACCAGACGCACATATCAAGGAACATGAAGCCTAAGAACGAATACACGTGCGCGGAGTGCGCGGAGAAGTTCAAGAGCTGTTCTGCTCTCGCAAACCATATAAAGCTTATACACAGACTCAAACAGAAGCAGATTAAAGATATCGTGAACCCGTCGGATTTTTGTGAGGTCGTTGTGGCAAAAGCGGAACCCCTGGACTGGATCCAGAGTCACAACGACTTTGGTGAGGTTCCGATAGAGAGCGAGGCGATGGTGGACCTTAGCGGGTTCACCTGTCCCATCTGCGCCAAGAAGATGCCGACTCTCATATCTCTGAAGAGGCACGTGAACTGGCACTCTAATGTAGGCAATAATATTGCGAAGAAGTACGAGTGTCCCGTTTGTAAGGAGTCCTTCAAGTTCCAATGTCACTACAAGATCCACATGCGGGAGCACTACCGCGACCCGAACCTGGACCCGCGGCACCTGACGTGCGCTATCTGCGGGCGGCGCAGCAAGCACCTCCGCGCGGCGCAGGCGCACATGACCTACCACAAGCAGACGCGCTTCCAGACCAAGGACTACCAGTGCTCCATCTGCGAGCGCGTGTTCCAGCACCGTAAGGTGTACCTCTCGCACATGGCCATACACTACAAGAAAGGCGACAGTGTGCACAACACTATCGTCGGACACGCGCTCCCCAACAACGCCGACAGGAGCGTGTTTGACGGCACGCACACCTGCCAGCTCTGCGGCAAAGTGTGCGACTCTGAAAACTCCCTAAAACATCATTTAATCTGGCACAAGTCTAAAACATCCCTGTTCGGTGCCCGCCACGAGTGCACCATCTGCAAAGTGAAGTTCACAAACAAAAGAAGACTAGAACTACACACCCGAGCTCACTACGAAGACGACAACGGCCCCTACAAGTGTAACATCTGCGGCAAGGGGTTCACCCACGAGGGCTACTTCCAGAAACATGTCAAAGGACACAACTTCGACCATCAGTCCCACAAAAAGAGAATCGATAAAATCAGAAAGGATAAAGTGAAATGTCCAATATGTACGCGGTACTACCCTGACCTGGTAAAGCTGATCCGCCACTTGCGCCGGACGCACCCCGAGAGCAAGATGATCAAGTCGGACCCGGACGCCCCGCCACCGCTGTACTACTCCTGTAAACTGTGCGCCAAAGTGTTCCTAGACGAGCGGAGACTGCAGTCACACGAGGAAGCTCATTTGCGAAAGCCAGAGTTCTTCAAATGCAAGTTCTGTGGAAAGAAATACATATCGCTTAAGAGCCACACGCTCCACATAAAGGGTCACTTGGCGCAGAAGCATTACGACAACCCGCTGAAATGTCCGCACTGTGACGAGAAGTTCGTGAAGGGCTACTCGCTGCACCACCACCTGCGCGACGCGCACAACATCAACGAGAACTGGATCGCGGAGCGCACGGAGCAGCCGCTGTCCGGCCCGCTCAAGGAGCTGCAGTGCTCCATCTGCATGAAGGTGCTCGCCAGCAAAGGCAACTACGAGCGACACATCGACTACCACAACTCCTTGAGGTGCAACTACTGCTTCGATTACTTCAGCTCTCTCCGATTCCTAGAAGGACATCTAGCGTTTGCGTGCGAAAAGAAAAAACTGTTAGGTGATACCGAGGTTTACCCTAAGAAGGTGAAATGCAACATCTGTTACAAAGCATTCCATGTTCAAGTGAAGCTGGACTGCCACTTGCGCACGCAGCACGGCATCATAGTAGACAGGGAACAGTCCGCTGGCAAGCAGGAGATTGTCTGTGATTACTGCTTTAGAGTTTTCGAAAACGAGTACGCACTGACGACTCATAAGATATACCATCGCACGGTTGGCTACTACGGGTGTATTTACTGCCCAAAGAAGTTCAACTCGTTGACTGTGTATCGGAAGCACAAGACTTACCATCTGTCGCAGATCAATGCGGACAACCCGACCAAGTGCGAACACTGTGACGAGACGTTCGCTGCCTTCAGGGAAATGATAAACCACATGAAAGACGTACACGGAGACGACAAGGAGTGGTTCACGGAGCCCAAGGAGTCCATCGAGGAGACCTGCCCCATATGCAACAAGCGATTCTACAACCTCCACAAACACTTGACTTACCATGAAGAAAACAAGTGCAAGAAGTGCAGCGAATATTTCTACTCCAGGGCGGACTACGATAGTCATCTTTGCGCTATTGAAAGCGATGACGAAGGCACCGGGTACGTGGACACCGAGAACACGTTCCAGTATGAAGAGTGCAGGTTCTGCTTCAAACCCATCACCAAGAAGAGCACCAAACGGCTCCACGACCAGATACACAAGGGCTCGGGTTCGATATCATGTCGGTTCTGCCCACTCAAGTTCAAAACTATAGACGCTTTTAATATTCACGCTTTCTCTCATCGAAGTAGAAAATACAATAAAAAACCGATAAAATGTCGGAAATGCGGAGAGAAGTTCGTTAAATACGGGCCGTTTATAAAGCACATGAAGTTAGTTCATAAGTGTACAAAGAAGCTTCATTATAGAGCCGTTGTGAAGCCTGAGAAATGTGTCATTTGTGGAGACGACTTCCCGAACCTACACAACCATTACCGCGCTCATCTGCTCAACCAGTGTCAAGGGTGTCTCAAATACTTCACCTCGTACAAGCTGATATCTGCACATCAGTGCGACAAAGAGGATGCCGACCCGTCTAAAGTATTCACTAGTGATGCTAACTTGAAAGAGCTGATAAATACCTATGTACCTAAGGACGAAAAGGATGATGAGAAGTACTACGGATATTCTGACGACGAGGAAGACGATGTAGAGCCGCAGGCACTTGGCGAAGAAGAAGAAAGTCAGGAGGGATACACACCCATGCTCCAGTCGCCAATAATATCTGATGTCCTGTCGTTGTTCAAGACAGAGATGAATGGAGTAGGCGAAGAGGACGGCGTGGTTGATGACAATGATGTAGTTAATTTAACTGACGATGACTCCTTGGGTTTCGGAAATTCCATTGTACCAGTTGTTGTCGTTATAGATGATGATTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTIDNALQLAEMAMECARVKIYEGDGLPDKVCSECIQKLSSAHIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSNHTDTSILTKPPSSIEEKVTPATRTRKRSAESVGNASTGGVSSDYRPSCSKRIQELRRSHKRPRRLSGNNSLFDSDYEDNGGSFLAETDSDEPLLKNSFNCEQCPKHFTSQKSLAIHKRIHNKKESLGENAVVNIPQKTDDATDDDEKLNCNKCGKTFKLKIMLKRHHEICGKTVKPANMEKQLLISLEPIDGMQNRNIVCELCSSKFKTVDNLAKHMKVVHAAVLKKENLEKLENGKVSVPCMFCHECFDDYYVHSAHFHSCSKRDNSVPYKCPLCKKILSRKSTYLLHLKNMHFEPRMSAKSSEEPEAQEYHECRMCYKKLPSQALLITHLAAHVSNIDDNDGGADNESRASTLDDDASIRSVHSQSNTPTNIYKCPTCGKEFKYNGALQSHQARCHSEVPVEVKFEPPDKASTSLLSETAYKQTESESSQEEDDNTCDICEKQFSYRRLLLHHKRTKHNMSSGHKRAKIYLKDCSVRCLICDIDMKVGVINEHNQTHISRNMKPKNEYTCAECAEKFKSCSALANHIKLIHRLKQKQIKDIVNPSDFCEVVVAKAEPLDWIQSHNDFGEVPIESEAMVDLSGFTCPICAKKMPTLISLKRHVNWHSNVGNNIAKKYECPVCKESFKFQCHYKIHMREHYRDPNLDPRHLTCAICGRRSKHLRAAQAHMTYHKQTRFQTKDYQCSICERVFQHRKVYLSHMAIHYKKGDSVHNTIVGHALPNNADRSVFDGTHTCQLCGKVCDSENSLKHHLIWHKSKTSLFGARHECTICKVKFTNKRRLELHTRAHYEDDNGPYKCNICGKGFTHEGYFQKHVKGHNFDHQSHKKRIDKIRKDKVKCPICTRYYPDLVKLIRHLRRTHPESKMIKSDPDAPPPLYYSCKLCAKVFLDERRLQSHEEAHLRKPEFFKCKFCGKKYISLKSHTLHIKGHLAQKHYDNPLKCPHCDEKFVKGYSLHHHLRDAHNINENWIAERTEQPLSGPLKELQCSICMKVLASKGNYERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFACEKKKLLGDTEVYPKKVKCNICYKAFHVQVKLDCHLRTQHGIIVDREQSAGKQEIVCDYCFRVFENEYALTTHKIYHRTVGYYGCIYCPKKFNSLTVYRKHKTYHLSQINADNPTKCEHCDETFAAFREMINHMKDVHGDDKEWFTEPKESIEETCPICNKRFYNLHKHLTYHEENKCKKCSEYFYSRADYDSHLCAIESDDEGTGYVDTENTFQYEECRFCFKPITKKSTKRLHDQIHKGSGSISCRFCPLKFKTIDAFNIHAFSHRSRKYNKKPIKCRKCGEKFVKYGPFIKHMKLVHKCTKKLHYRAVVKPEKCVICGDDFPNLHNHYRAHLLNQCQGCLKYFTSYKLISAHQCDKEDADPSKVFTSDANLKELINTYVPKDEKDDEKYYGYSDDEEDDVEPQALGEEEESQEGYTPMLQSPIISDVLSLFKTEMNGVGEEDGVVDDNDVVNLTDDDSLGFGNSIVPVVVVIDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00785388;
- 90% Identity
- iTF_00274611;
- 80% Identity
- -