Ccla006254.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Caradrina clavipalpis
Gene Symbol
-
Assembly
GCA_932526535.1
Location
OW052094.1:5749008-5763744[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 8e-05 0.0051 17.4 2.2 1 23 430 452 430 452 0.97
2 20 0.0042 0.27 12.0 0.6 1 20 458 477 458 480 0.94
3 20 2.1e-05 0.0013 19.2 5.6 1 23 499 521 499 521 0.98
4 20 9.7e-05 0.0062 17.2 4.1 1 23 527 549 527 549 0.99
5 20 3.7e-05 0.0024 18.5 5.3 1 23 555 577 555 577 0.97
6 20 8.4e-06 0.00054 20.5 7.4 1 23 583 605 583 605 0.97
7 20 7.1e-07 4.5e-05 23.9 2.9 1 23 611 633 611 633 0.97
8 20 0.0001 0.0065 17.1 6.7 1 23 639 661 639 661 0.97
9 20 0.0001 0.0064 17.1 6.5 1 23 667 689 667 689 0.97
10 20 4.9e-07 3.1e-05 24.4 1.9 1 23 695 717 695 717 0.98
11 20 9.6e-06 0.00061 20.3 7.7 1 23 723 745 723 745 0.98
12 20 2.5e-05 0.0016 19.0 6.6 1 23 751 773 751 773 0.98
13 20 9.2e-06 0.00058 20.4 5.5 1 23 779 801 779 801 0.98
14 20 8.2e-06 0.00052 20.5 5.2 1 23 807 829 807 829 0.96
15 20 1.1e-05 0.00069 20.1 5.2 1 23 835 857 835 857 0.98
16 20 3e-06 0.00019 21.9 6.0 1 23 863 885 863 885 0.98
17 20 1.7e-05 0.0011 19.5 8.1 1 23 891 913 891 913 0.97
18 20 0.0001 0.0064 17.1 6.5 1 23 919 941 919 941 0.96
19 20 0.00073 0.046 14.4 0.3 1 23 948 970 948 970 0.96
20 20 0.31 20 6.1 4.9 1 23 982 1004 982 1004 0.99

Sequence Information

Coding Sequence
ATGAATCAGGAGCAACATAATATGCATACGGGTGGTGGCCAGCCTCCGGGAAGTTCTGAGTCACAGGTCCAAAGAGTTCAAGCTACACAGCAACAGCAACAAAATAACTTGCCAGCCACGACATCTGCAACAGATCTGCGAGTGAACTCAGCGGCAGTGAACGTTGCTTTGTCTAGTGTCGCAAAATATTGGGTGTTTACAAATTTATTCCCCGGACCCATACCACAAGTTTCTGTGTACGGATTACCTGCTGGAGCCAGGATTGAAAATGGGAAGCCTGTTCAGCAATTTCAGGATCTAGGTCAAGCTCATGCAAGTATACTAAATGGAGATCCAAATATTCTACTTGGGCATCATGCGGGGCAGTCACAAGTTACAGTATCGGCTCCTGGTGGTCAACAGATACCAGTCTCTCAAATCATTGCCACACAGTCTGGACAAACTCATGAAGCACTTGTGGCCCATAGTCAGCAGCAAGCTGAGTTGGCAGCGGCTCAGGGCGCCGCCAACAATGCCCAGGTGTCAGTTAGTGGAGGCCAGGCCACTCACCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACAACACCATAACATTGATATGGGACACCATTCTCAACAACACATAATGCAGCAACAGCTGATGGCGCAGGCGCGGCCGGAACACAGCAACCAACAGATTCAACTGACGGTAAGCGAGGATGGCATAGTGACAGTGGTGGAGCCGGCTGGCAATAAATTGGTGGATAAGGAGGAACTCCATGAGGCAATCAAGATGCCCAACGACCATACTCTCACCGTGCATCAGCTGCAGCAAATCGTGGGACAACAGGTAATAGACAGCGTAGTACGGATAGAACAAGCGACCGGTGAGCCGGCGAACATACTTGTGACCCACAATCCTGACGGTACGACCTCCATAGAAGCCAGTGCCGCCGACCCTCTGATCGTCAAGGACGAGAAGAATTCTAACAAAATAGAGGCTGCACAGTTCGCTATACCTACGGAAATAAAGGATATCAAGGGAATTGACTTGAAGAATGTGGGAGCCATGGGCATGGAAGGTGCTGTAGTAAAGATCTCAGCCGGTGCGTCAGAGCACGATCTCCACGCGATGTACAAAGTCAATGTAGAAGATCTGTCACAATTACTTGCTTACCATGAAGTGTTCGGAAAACTTAACTCGGAAGGACAGCAGCAACAAGCAAAGGCAATAAACGACGTGGAAGTCGAAGTCGAAGCCGGCACCAGCGCAGCTATGTCAGAAGCCGAATCGCCACCCGGCCACCACTCGTGTGATATTTGTGGGAAAATATTCCAGTTCCGATACCAACTCATTGTTCATAGGCGTTATCATGGCGAAAGTAAACCGTTCACGTGTCAAGTTTGCGGTTCTGCGTTTGCAAATCCTGTCGAACTGTCAAGGCATGGGAAATGTCATCTTGCTGGAGACCCGAACGAAAGACACGCCAAGAGGATGGCGCAAGATAAGCCGTACGCTTGCACCACTTGCCACAAAACTTTCTCTCGCAAAGAACATTTGGATAATCACGTTCGTAGCCATACTGGAGAAACCCCTTACAGATGCGAATTCTGCGCGAAGACTTTCACCCGCAAAGAGCACATGGTCAACCACGTAAGAAAACATACGGGCGAAACACCGCACCGATGTGATATATGCAAGAAGAGTTTTACCAGGAAAGAACACTTCATGAACCATGTTATGTGGCACACAGGTGAAACGCCGCACCATTGTACAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGATCTCACACGAACGATACTCCGTTCCGATGCGAACTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATACTGTGGCATACGGGAGAGACCCCGCACCGCTGCGACTTCTGTTCGAAAACATTTACTCGCAAGGAGCACCTACTGAACCACGTCCGCCAGCACACGGGCGAGTCTCCTCACCGCTGCAACTTCTGCAGCAAATCGTTCACGCGTCGAGAGCACCTGGTCAATCACGTGCGCCAACACACCGGGGAAACGCCCTTCCAGTGCGGATACTGTCCTAAAGCCTTCACGAGGAAGGACCATCTCGTGAACCACGTCCGTCAGCATACAGGCGAATCTCCACACAAATGCTCGTACTGCACAAAATCGTTCACTCGCAAGGAGCATTTGACGAATCATGTGCGACAACACACGGGCGAGTCTCCGCACCGCTGTACTTACTGCGCCAAATCCTTCACTAGGAAGGAACACCTCACTAATCATGTCAGACAGCACACGGGAGAAACGCCACACAAGTGTACGTACTGCACGCGGGCCTTCGCGCGCAAGGAGCACCTCAACAACCACATCCGGCAGCACACCGGCGTCACGCCGCACGCCTGCTCCTACTGCAGCAAGACTTTCACTAGGAAAGAACACCTCGTTAACCATATACGGCAACACACGGGCGAGACTCCGTTCAAGTGTACGTTCTGTTCAAAGTCGTTCTCTCGTAAAGAGCACCTCACAAACCACGTGAACCTTCACACGGGACAGACGCCTCACAAATGTCCTTTCTGCACAAAAACATTTTCCAGGAAAGAACATTTGACCAACCATGTCAGGATTCACACGGGCGAGTCTCCGCACCGCTGCGACTTCTGTCAGAAGACATTTACGCGTAAGGAGCACTTGACCAATCATATGAAGCAGCATACCGGCGACACCGCGCACGCCTGCAAGGTCTGCGCGAAACACTTCACCCGGAAAGAGCATCTTGTCACGCACATGAGATCGCACAGTTGCGGCGAGCGTCCATTCAGTTGTGGCGAGTGCGGCAAATCTTTCCCTTTGAAAGGCAACCTACTATTCCATGAACGATCGCACAACAAAAACAACGCTAATGCTGCCAATAAGCCGTACCGATGTGAAGTCTGCTCCAAAGAATTCCTCTGTAAAGGTCATTTGGTATCTCATCGACGCACACACGCGGAGTGGGCGGAAAACGCCGCGCCCGGCGAAGCACCAGCCGAAACAGAAGACTGTACTGATAATAAGTGTATCAAAGTTGAGCCAGACAGAACTGAAAGAAAACATGAAATCAGAACGTCTGTCGATACAAGACCAGTTGAGAGCAATGTCGCACAAAGTCAACCAAACCCACCTACTGTGATGATAACTAATAATCAACAAGTACGCGCAGCCAGCGTGAGCACGGTGGGCGCGGTGAGCGCGGTGGGCGCGGTGGGCGCGGGCGCGGGCGCGGCGGGCGGCGCGCCCACGTTCGCGCACGCCGCGCAGCACCACGCCGCGCCCAACATCGCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence
MNQEQHNMHTGGGQPPGSSESQVQRVQATQQQQQNNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPVQQFQDLGQAHASILNGDPNILLGHHAGQSQVTVSAPGGQQIPVSQIIATQSGQTHEALVAHSQQQAELAAAQGAANNAQVSVSGGQATHQQVPNNRVEFVQHHNIDMGHHSQQHIMQQQLMAQARPEHSNQQIQLTVSEDGIVTVVEPAGNKLVDKEELHEAIKMPNDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLIVKDEKNSNKIEAAQFAIPTEIKDIKGIDLKNVGAMGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQQAKAINDVEVEVEAGTSAAMSEAESPPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRMAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCTRAFARKEHLNNHIRQHTGVTPHACSYCSKTFTRKEHLVNHIRQHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGQTPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHMKQHTGDTAHACKVCAKHFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNNANAANKPYRCEVCSKEFLCKGHLVSHRRTHAEWAENAAPGEAPAETEDCTDNKCIKVEPDRTERKHEIRTSVDTRPVESNVAQSQPNPPTVMITNNQQVRAASVSTVGAVSAVGAVGAGAGAAGGAPTFAHAAQHHAAPNIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01030446;
90% Identity
iTF_01030446;
80% Identity
-