Basic Information

Insect: Caradrina clavipalpis
Gene Symbol: -
Assembly: GCA_932526535.1
Location: OW052115.1:4959635-4964521[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0012 1.2 9.4 0.4 4 26 9 31 6 35 0.91

2 10 0.043 41 4.5 0.1 14 27 88 101 76 105 0.85

3 10 0.048 46 4.4 0.1 11 43 138 167 135 168 0.84

4 10 6.7 6.4e+03 -2.5 0.6 18 28 218 228 205 241 0.70

5 10 0.77 7.3e+02 0.5 0.7 14 23 242 251 230 259 0.77

6 10 2.3 2.2e+03 -1.0 0.0 18 27 274 283 271 285 0.84

7 10 3.3e-05 0.032 14.5 0.1 8 43 296 326 291 327 0.90

8 10 0.019 18 5.6 2.4 5 26 320 341 320 343 0.90

9 10 0.0018 1.7 9.0 1.3 14 38 357 378 346 380 0.82

10 10 0.00054 0.52 10.6 4.4 5 44 377 412 373 412 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0012	1.2	9.4	0.4	4	26	9	31	6	35	0.91
2	10	0.043	41	4.5	0.1	14	27	88	101	76	105	0.85
3	10	0.048	46	4.4	0.1	11	43	138	167	135	168	0.84
4	10	6.7	6.4e+03	-2.5	0.6	18	28	218	228	205	241	0.70
5	10	0.77	7.3e+02	0.5	0.7	14	23	242	251	230	259	0.77
6	10	2.3	2.2e+03	-1.0	0.0	18	27	274	283	271	285	0.84
7	10	3.3e-05	0.032	14.5	0.1	8	43	296	326	291	327	0.90
8	10	0.019	18	5.6	2.4	5	26	320	341	320	343	0.90
9	10	0.0018	1.7	9.0	1.3	14	38	357	378	346	380	0.82
10	10	0.00054	0.52	10.6	4.4	5	44	377	412	373	412	0.86

Sequence Information

Coding Sequence: ATGTTCACAAGAAACTCGTTCATGAAAGACCATGTTAGGCGGACACATTTGAAGGAGAAGAATATTCCTTGCTCGATTTGTAACGAGAAATTCTTTGATAATTATCTTTTGAGGATGCATATGGTGAAACATGAAGGTACAAAATTCAATACCGTCGAAGACAAATATAAGAAAATGGAAGTCGCCCGCAAGTTATTAATAAAACGGCGTAATGTCGAATATGTTTTGCAATATAGCAACGTTACACCTTTTACTTGGCACAAAGGAAAATACAAATGTTTCTATTGCAACGAAACTACTAAAGACCCAGTCGTTCTTAGAGAACATACTGCCGAAGAGCATCAATTCGCGAATTTAGAACTAGTTGTGTTCGACAGAACGAAAAACAACAGAAATAAAGATGCGGCAGTTAAAATTGACGTCACTAACATGTCTTGCAAACTCTGCCCTCAAACTGTGACTAATTTGGAAGAGCTTATACATCATTTGATCATTGCACATGATGCTGAATACGATGTCAGTGTTCCTAACTGCCTGCTGCCCTTTAAGTTAGACAAAGACCAGCCTACATGCCCCACTTGTAACATGAAATTTGTTTTCTTCGAATATTTGCTCCGACATGCCAATAAACACCATCTTTCTCACCATTACATTTGCGATGTTTGTGGGACAAGCTTTCAAGGAGAGAATCATCTCAAAATGCATTATAGGTACTACCACAGAGAGGGTGGTTACACCTGCGAGTACTGTGGAATAAGTCTTGCTACCTTATCCAAAAAGATTCTCCATGAAAAGAACGTACATTTAGTCAACCTATCCACTTGTCCTCATTGCCCGGAAACATTCAAAAGCCCTTACTTGAAAAAACTTCATTTAGCTAACGTACACGAGGTTGAAGAGCTGAAAATTAAGTGCCCGTTCTGTCCAAAAGTTTACCCTCAAGAGTCTATAATGTCACGACATATGAGAAGGGTACATCTTAGAGAGAAAAATGTAGAATGTGAGGTCTGTGGGGACAAATTCTTCGGTCCATATGACGTGAAACTCCACATGGTAAAACATAATGGCGAAAAAAAATTCGTATGTTCTGTTTGCGGGAAGAAATTTTCTAAACGAAGCAATTTGAACTCTCATGCAGTGTTGCATACGAAAGAGAAAGATTATGTATGTGTAGTGTGCAATAAGGCGTTTGCGCATCAGACGAATTTGCGGATGCATATCAGAAATAGACATAGTCGGTTCGACTTGGCTCCAATAGTAGACGAAATTGATGAGAGTGATATGGTTCAAATGGAGATCATTCAGGAGGAATTGGAAGGAGATGTAGCAGGACAATATATTCAGTGA
Protein Sequence: MFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGTKFNTVEDKYKKMEVARKLLIKRRNVEYVLQYSNVTPFTWHKGKYKCFYCNETTKDPVVLREHTAEEHQFANLELVVFDRTKNNRNKDAAVKIDVTNMSCKLCPQTVTNLEELIHHLIIAHDAEYDVSVPNCLLPFKLDKDQPTCPTCNMKFVFFEYLLRHANKHHLSHHYICDVCGTSFQGENHLKMHYRYYHREGGYTCEYCGISLATLSKKILHEKNVHLVNLSTCPHCPETFKSPYLKKLHLANVHEVEELKIKCPFCPKVYPQESIMSRHMRRVHLREKNVECEVCGDKFFGPYDVKLHMVKHNGEKKFVCSVCGKKFSKRSNLNSHAVLHTKEKDYVCVVCNKAFAHQTNLRMHIRNRHSRFDLAPIVDEIDESDMVQMEIIQEELEGDVAGQYIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01285796;
90% Identity: iTF_00925098;
80% Identity: iTF_00273837;