Ccla000496.1
Basic Information
- Insect
- Caradrina clavipalpis
- Gene Symbol
- clz9
- Assembly
- GCA_932526535.1
- Location
- OW052087.1:11759086-11760226[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-09 5.7e-06 26.1 0.0 1 37 16 53 16 58 0.91 2 2 5.1 5.3e+03 -2.6 0.1 24 29 160 165 160 166 0.85
Sequence Information
- Coding Sequence
- ATGCCGCGAATATACATAAAAAAGGGGACAAGGACAGGAGAAATAGATGAAGATGCAATGAAGTCTGCGATGAAAGAAGTTTTGGATAAAACTTTATCAATAAGGAAATCTGCACAAAAATATGGTGTCAAGCCATCAACTTTAGAAAGTCGTGTGGCAAAATTTCATAAGCAAGAACCTGTCAATAGAGAGAATAATACACAGGTAAGTATATTTTTGGAGGTGTTGAAACATATCCAAAACAAATCGTTATGTTCTAAAGATAACCCTATTTCGCTCCTGGTCGATAACCATGAAAGCCACGTTACAATAGAAAGCGTGGACTATGCGCGCAATAATGGCATTGTTTATCTATCGTTCCCACCTCACACAACACATCGGCTCCAACCCTTAGACGTTGGAGTATTTGGACCTTTTAAAGCCAAATTGAAGATTGCTTTTAATGATTGGCATGTTAATAATCCAGGCCAAACTATCAACATATACAACATACCGGAACTGGCTAAAGTAGCATAA
- Protein Sequence
- MPRIYIKKGTRTGEIDEDAMKSAMKEVLDKTLSIRKSAQKYGVKPSTLESRVAKFHKQEPVNRENNTQVSIFLEVLKHIQNKSLCSKDNPISLLVDNHESHVTIESVDYARNNGIVYLSFPPHTTHRLQPLDVGVFGPFKAKLKIAFNDWHVNNPGQTINIYNIPELAKVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -