Cruf034094.2
Basic Information
- Insect
- Cantharis rufa
- Gene Symbol
- Zfx
- Assembly
- GCA_947369205.1
- Location
- OX376306.1:4084664-4086703[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.005 0.66 11.6 0.5 1 23 122 144 122 144 0.98 2 9 6.4 8.5e+02 1.8 0.6 1 8 150 157 150 158 0.87 3 9 0.021 2.8 9.7 1.9 1 20 215 234 215 239 0.91 4 9 0.0022 0.29 12.7 0.2 3 23 247 266 245 266 0.96 5 9 1.2e-05 0.0016 19.9 0.1 2 23 272 293 271 293 0.96 6 9 2.5e-05 0.0034 18.8 2.8 2 23 300 321 299 321 0.97 7 9 5.2e-05 0.0069 17.8 1.2 2 23 330 351 330 351 0.97 8 9 4.3e-06 0.00057 21.3 3.8 1 23 357 379 357 379 0.98 9 9 4.8e-06 0.00063 21.1 1.5 1 23 385 408 385 408 0.96
Sequence Information
- Coding Sequence
- ATGGTTGATCTCGGTGGAAGCGGGTCTCTGAACCTACGCATTTACCAAAAAGATCCTCAAAGGATTGATAACTTCAAAATCATAGATCATGATAAACGGATTCTCGTTAATCCATTCGTGCGCGTCATTTTAGTTAAATGTTTATCAGGTTTTCTAGCGCCATCTAGTTGTAATTTTAAAGTGACAGCGGTAATGGATGACAAATTTGTAAACATAAATAATTTAGATCTTCCAGTGAAGACAGAAGAGTTGGAAATAAAAACGGAAGATGTTGATTATAACCTAGAAAGTTTGCACGATACACTAATCATCAAGGAGGAAGGCGACGAGGAGTCGTGTAAACTTGAAGTGGAGCAATCGTTATTTTCATGTCCGTCGTGTAATTATGAAACTTCAAATAAATATCGCATAGAAGCCcacttaaaaattcacagcggcgagaagtcgtttatatgcgaaatttgtggttacaAAAATGTTTGTGAAAAAGTTTACATCAAAGAAGAAGTCGACGTAGAAAGTGTTGGTGACGATGAAATAGATTTTGGAGGGGTCGAACCCAAGTTGGAACCGAAAGTTGAAAATGTTACCTTGAATGATTTGCTTCGGAAAGGCATCGAAGAGAGGAAGACGGTTAAGGTTTACAAATGTAAAGGGTGTAAATTTTCGACGACGACCTACAGGTTGTGGAGGAATCACCGAGATAATAACGGTCACAAGGAGATTGTCAGGTCGATTTGTAACGTTTGTGGGAAGTCAATTCGAAGGGACAATTTACCCAAACACATGGCCACTCACGCTCAGACGCCGGTGTCGTGTGATATTTGCGGAAAAGTTACCAAGAGTCGATATGCCCTACTGGCTCACATGTTTATTCACAAAGATTCCCCGATGTTACAATGTTCGGTTTGTGGTAAACGTTACAAACACAAACAAGGATACAATGCCCATCTGAAGAGACACGAACGTGGAGATGTTAAGACTGAAGAGTGTTTCACGTGCGGAAATTTTTTTTACGATAAACAAACGCtaattaaacacattaggactcacaccggcgaaaaaccttattcctgtcaattttgcgggaaggaatttacaaatacttatacattgaaaactcacacgaggagacacacaaacgaaagaccttttgcctgcagcgactgcgaCTTGACGTTCACACAAAGAGGGGACTTACGAAAACATTTTAAATCGAAACATCCTAATAAAATTTTGGAAAACTGCAAAGTTTGA
- Protein Sequence
- MVDLGGSGSLNLRIYQKDPQRIDNFKIIDHDKRILVNPFVRVILVKCLSGFLAPSSCNFKVTAVMDDKFVNINNLDLPVKTEELEIKTEDVDYNLESLHDTLIIKEEGDEESCKLEVEQSLFSCPSCNYETSNKYRIEAHLKIHSGEKSFICEICGYKNVCEKVYIKEEVDVESVGDDEIDFGGVEPKLEPKVENVTLNDLLRKGIEERKTVKVYKCKGCKFSTTTYRLWRNHRDNNGHKEIVRSICNVCGKSIRRDNLPKHMATHAQTPVSCDICGKVTKSRYALLAHMFIHKDSPMLQCSVCGKRYKHKQGYNAHLKRHERGDVKTEECFTCGNFFYDKQTLIKHIRTHTGEKPYSCQFCGKEFTNTYTLKTHTRRHTNERPFACSDCDLTFTQRGDLRKHFKSKHPNKILENCKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -