Cruf030312.1
Basic Information
- Insect
- Cantharis rufa
- Gene Symbol
- -
- Assembly
- GCA_947369205.1
- Location
- OX376307.1:7975991-7977314[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.082 11 7.8 0.7 1 23 117 139 117 139 0.96 2 10 0.0083 1.1 10.9 0.3 3 23 144 165 143 165 0.92 3 10 0.0013 0.17 13.5 0.7 1 19 185 203 185 208 0.91 4 10 0.00035 0.047 15.2 2.0 1 23 218 240 218 240 0.98 5 10 7.5e-07 0.0001 23.6 0.1 1 23 246 268 246 268 0.97 6 10 0.00032 0.043 15.3 3.9 1 23 274 297 274 297 0.96 7 10 8.2e-05 0.011 17.2 2.2 1 23 305 327 305 327 0.99 8 10 3e-05 0.004 18.6 1.1 1 23 333 355 333 355 0.97 9 10 0.0016 0.21 13.2 1.8 1 23 361 384 361 384 0.97 10 10 7.9e-05 0.01 17.3 5.7 1 23 398 420 398 420 0.96
Sequence Information
- Coding Sequence
- ATGGGAACGCAGTCTGTGTGTAATATTTGCTTGCAAGCTGCTCATATATTGCACGGAATAGGTGAGTCTCCAGACTATAAAAGTATTAAATGGATTACAAAACTGAATTCTTGTGTACCTGAAGTGAAATGGGACGACAGCTTTATGATCTGCGGAGTTTGTACAACTCATCTGGATGCCGTTTACAATTTCCGTAATCTGTGCATCAGTTCAAATATAACGAGTTTAAGTGTCGATAATGAATTTATTGCAAGTAACGTTAAAGAAGAATATAATTACAATGCGTTTCCTGTGGACACTGCTGAATTTGTTTCCGACAATGGCGCCTCGCTCGAGTGCAAGGAAGAATACAACTGCAACTTTTGCGAAGAAACATTATTTAATAAAACAGAAATTCTTAAACACGTTCAGGAACACACAAAAAACAGTTGTATGTTATGCAAAGTAACGTTCAGTACTACATCGGAAATAAAAAATCACATCGAAGAGGTGCATACAACTAAACCTACGGAAGTAGTAAAAAATACCTCCAAAAAGAATCGAATCAGTGAATTTCCATGTGACGATtgtgaacaaatattttcatcaagtccgaaactcatcagacactgtgtaacggAGCACGGATACAACCCTGCTGATGTACGACCGTTTCGTTGTGACATCTGCTTGAATAAATTTACTTCATCTTCCTATTTATTAATTCACAAAAGATACCACAACAAAATCAGACAATTCATTTGCCCATATTGCGGAAAAGGTTTTATAACTTCTGACGATTTAAGTGTCCACGAGAAAAGTCACCTAAATAAGAGGGAGTATTCGTGCGAAAAATGTTTGAAAACATATAATACGTGTAAAAATTTAAGAACCCATAGGTTGGTTGTTCATACAAATCcgagcgaatggaattatgtgtgtccatattgtgataaacgatctcctacacgatcaaaccataaccaacacgttcggacgcacacaggagaaaagctgtttgcgtgtcacttgtgtgacaaacggttcggagtgaaaagtgtcttgaagaaacacatcgcgtcgcattcaaatattagggcgtataagtgtcagcatTGTGATAAGGAATATAAAGCTGAACTTGCTTTTAATGTGCATTTGAAAAGAGATCACGATATAGGTAACGCAAAAGTTCCTGTAAGGGTGAAGAGACATTTTTGTCACATTTGTCCCAAGTCTTATTTCGATAAGAATAAACTGACCCGTCATTTGTTAACCCATGCCAAGGGCAAATAA
- Protein Sequence
- MGTQSVCNICLQAAHILHGIGESPDYKSIKWITKLNSCVPEVKWDDSFMICGVCTTHLDAVYNFRNLCISSNITSLSVDNEFIASNVKEEYNYNAFPVDTAEFVSDNGASLECKEEYNCNFCEETLFNKTEILKHVQEHTKNSCMLCKVTFSTTSEIKNHIEEVHTTKPTEVVKNTSKKNRISEFPCDDCEQIFSSSPKLIRHCVTEHGYNPADVRPFRCDICLNKFTSSSYLLIHKRYHNKIRQFICPYCGKGFITSDDLSVHEKSHLNKREYSCEKCLKTYNTCKNLRTHRLVVHTNPSEWNYVCPYCDKRSPTRSNHNQHVRTHTGEKLFACHLCDKRFGVKSVLKKHIASHSNIRAYKCQHCDKEYKAELAFNVHLKRDHDIGNAKVPVRVKRHFCHICPKSYFDKNKLTRHLLTHAKGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271808;
- 90% Identity
- -
- 80% Identity
- -