Cruf033311.1
Basic Information
- Insect
- Cantharis rufa
- Gene Symbol
- -
- Assembly
- GCA_947369205.1
- Location
- OX376307.1:34686107-34687889[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0091 1.2 10.8 4.5 1 23 134 156 134 156 0.97 2 13 0.0071 0.95 11.1 1.3 3 20 228 245 226 247 0.93 3 13 0.00015 0.02 16.4 0.4 2 23 262 283 261 283 0.96 4 13 0.79 1.1e+02 4.7 0.8 3 23 294 315 292 315 0.93 5 13 0.0019 0.26 12.9 0.2 2 23 322 343 321 343 0.96 6 13 0.012 1.5 10.4 0.1 1 20 355 374 355 377 0.88 7 13 0.051 6.8 8.4 5.0 1 23 382 404 382 404 0.98 8 13 0.0018 0.23 13.0 5.6 1 23 409 432 409 432 0.97 9 13 1.5e-05 0.0021 19.5 2.6 1 23 438 460 438 460 0.98 10 13 0.029 3.8 9.2 1.6 1 23 466 488 466 488 0.98 11 13 0.00012 0.016 16.7 5.5 1 23 494 518 494 518 0.99 12 13 0.00033 0.044 15.3 4.4 1 23 524 546 524 546 0.98 13 13 4.8e-06 0.00064 21.1 3.6 1 23 552 574 552 574 0.98
Sequence Information
- Coding Sequence
- ATGGAAATTATATTAGAAATACCAAAAGACATAAATAAAGTGTGCAGAACTTGTCTTAATGTAGCCGAAGCAGATGACTGTATTCTCTATCATCGTTTAATACAAAATAGTCGACCAACTGATATTAGCAAGTTTTTTGAAAGTGTGACATCGTTAAAGATTGCATTTGGCGATGGTTTACCTGAATTAATCTGTAATGATTGCTACGAAACCTTAGTCGAATTTAATGCTTATAAAATTCGGTGCCGAAATTCAGAAAAAAAGTTAAAAATTCTTTTGGAAAAATGTACTACTACTGCTTTACAAGAAGACATTGAAAGTGTTACCAAGACAATAGAAACTGTCAATTATTCTACTATGGATAATAGCTTTACCACGACAGATCGGAAAAATTTATATTTTGAGTGCCAACATTGTGATTCTATTTTTATGTCATATTATCAGTTAAGCAGACATCGATTTCGACATAATGCCACTAAGACACTTTCAGAGAGATTATTAGAAAATTGTATTCAGGAAGAAGAAATTAACAGTACTTTTAATGAAACAGAGGTATTACAACTTATTAAAATACGTAAATTAAGTTATAACAACAACGACGAGGATGTAAAAGAATCTCCTCGAACTTCAATAGTAAATAACACCAAACGCACATTCGTAATTAAAGTTCATTGTAGTAATTGCAAAGTATGCCGTCGGAAGTTTACTTCTGTTGAAGATTTGCGTACACACGTTTGTGAACCTCCTAATTCTAATTCGAAGGCAGTTATTGATTTTAGTAAGTCATGCAGTATTTGTGATAAATTATTTTCTGATCCCAGTGCTTTATCTTTACATTTTTTAAAACATGTTGAATCTATCGAATCGAAATATTTATTTTGTGAAGTTTGTGGTCAATTATTTGATTGCATTTCAAATTTAGATCAGCATTATAATATAAAACACAACGGTAAAATGTACTGGACTTGTGGTGAATGTCAGGCTACCTTCAACACAGAGATGGAGTTACTCAAACACAAGTCGGTGCATCCTTCGTTAACACAAACACCAAGTGGAACTAATTTTCCCTGCATTTTGTGTAAAAAAACTTTTTCTTCGAATGTCGACTTACTTGATCATTTACCCATACATGTGACAATGAAATACAATTGCAGAAGATGTAAATTATCTTTCTGTACACAAGAATCCAACTATGTTCACTTGAAGTCGCATCCTGGTGCTATACACACTTGCTCCATTTGTCGCAAAACTTTACACAGTAAATACTATTTAAAACTACACATTAAAACGGTACATTTTCCCACCGAAGTTCACAAGTGTGAAACTTGTGGTAAAGGCTTTAAAACTCTCGATCGGTTAAAAGTTCATTACAAAATACACCGCGTACTTAATAACTACATTTGCTCTTATTGTGGATTTGGCTCTAAATTTAGTGGTGACCATCAAATTCACATGAGAAGTCATACAAAAGAAAGGCCGTACAAATGTACTTTTGTAAATTGCAAAAGTAGTTTCACAACATCCACTCATCTGCGCACTCACATTAGAAAGCATCTGAATCTGCGCCCATATAAGTGCTCCTTTTGTTCTGCCGATTTCACCACCTGTAGTACTTTGAAAAAACATTTAATGCTCCATACTGGGGAACAGCCATATTCTTGTCCTGTATGCCAAAAAAAGGTTAGAAGAAGATATCACTTAAAAGTACACATGAAACAACATAGTAATATATAA
- Protein Sequence
- MEIILEIPKDINKVCRTCLNVAEADDCILYHRLIQNSRPTDISKFFESVTSLKIAFGDGLPELICNDCYETLVEFNAYKIRCRNSEKKLKILLEKCTTTALQEDIESVTKTIETVNYSTMDNSFTTTDRKNLYFECQHCDSIFMSYYQLSRHRFRHNATKTLSERLLENCIQEEEINSTFNETEVLQLIKIRKLSYNNNDEDVKESPRTSIVNNTKRTFVIKVHCSNCKVCRRKFTSVEDLRTHVCEPPNSNSKAVIDFSKSCSICDKLFSDPSALSLHFLKHVESIESKYLFCEVCGQLFDCISNLDQHYNIKHNGKMYWTCGECQATFNTEMELLKHKSVHPSLTQTPSGTNFPCILCKKTFSSNVDLLDHLPIHVTMKYNCRRCKLSFCTQESNYVHLKSHPGAIHTCSICRKTLHSKYYLKLHIKTVHFPTEVHKCETCGKGFKTLDRLKVHYKIHRVLNNYICSYCGFGSKFSGDHQIHMRSHTKERPYKCTFVNCKSSFTTSTHLRTHIRKHLNLRPYKCSFCSADFTTCSTLKKHLMLHTGEQPYSCPVCQKKVRRRYHLKVHMKQHSNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00270382;
- 90% Identity
- -
- 80% Identity
- -