Cruf034085.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis rufa
Gene Symbol
-
Assembly
GCA_947369205.1
Location
OX376306.1:4060489-4064415[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.19 26 6.6 4.7 1 23 131 153 131 153 0.98
2 16 0.00035 0.047 15.2 0.3 2 23 160 180 159 180 0.96
3 16 0.00025 0.033 15.7 0.2 2 23 186 207 185 207 0.96
4 16 0.023 3.1 9.5 2.6 2 23 213 234 212 234 0.92
5 16 0.0055 0.73 11.5 0.8 1 23 344 366 344 366 0.99
6 16 0.00093 0.12 13.9 0.5 3 23 374 393 373 393 0.97
7 16 0.00016 0.022 16.3 2.7 3 23 400 420 398 420 0.97
8 16 1.8e-05 0.0024 19.3 3.0 1 23 425 447 425 447 0.98
9 16 0.035 4.7 8.9 0.1 3 23 465 484 464 484 0.95
10 16 5e-05 0.0067 17.9 3.3 2 23 490 511 489 511 0.97
11 16 5.4e-05 0.0072 17.8 4.2 1 23 516 538 516 538 0.98
12 16 0.073 9.7 7.9 0.3 2 17 547 562 546 563 0.90
13 16 1.1 1.5e+02 4.2 0.3 1 13 567 579 567 583 0.87
14 16 0.0097 1.3 10.7 0.2 3 23 715 734 713 734 0.96
15 16 0.0008 0.11 14.1 4.8 2 23 740 762 739 762 0.97
16 16 0.002 0.27 12.8 3.0 1 23 767 789 767 789 0.96

Sequence Information

Coding Sequence
ATGGAATTGGAGTGCCGTACATGTTTACAAGTGTCCACGCAAATGTCGGATATATTTTCCGACGACCTACCGTTTAAAATACAGGAGATTTCATCCGTAGAAATTTCGTTGGACGAAAGGTTGCCTTCAAATATATGCGAGGAGTGTACAAGAAACGTAAAGCTGTTGTACGATTTTCGCGAAATTATCAGAAAAAACGACATGATTTTACGGGAGCGTCTCTGCAAGAAGGAGAACGAGGAGGCCTTGGACGTTCACTACGACGAAATTGAATTTAAAACTGAAGATAATTTTGAGTTTGAACTCGAAGAAGACGTTAAGTTTACAACCGATGCGGAAATTAGGAACGAAGATGAAGTGGTTGCGGACGATACGAAAGAAGGGGAGAAATACAAGTGCGACCGTTGCGATTTCACGTGTTCTTTATATAATTTGTGGAGGAATCATAAAAACACGCACAAAGAAGTTGCCAAATCCATGTGTAATATTTGTGGAAAATCCATAACATCGACAAACTTAAGACAACATATTTTAGTTCATACGGAACCGCCGGTGTCGTGCAAAATTTGCGGAAAATTAGTTAAAAATACGGAATCGTTACGGGCGCACATGTATATCCATAAAGGAGGTCCGCTTCAGTGTATAACTTGTGGAAAGATTTACAAGCACCGTCAGGGTTTTTACGCTCACCGAAGAAGACACAAACATGATTTACCCCATAAAATAGAAACGATAGCTTCGGTCGAGGTTCTGGAGGACGACAAGTTTTCGTCTAAAATATGCAAAGAATGCGTAACAAACGTGAACCAGATGTACGATTTTCGTAAAGTCGTCAGATCGAGTAACATGATTTTAATGAAACGTTGCATGAAGGAAGAGGAGGAGGTTGCCTTGCAAAATGAAGATACCGTCGAAACGGAACTTGAGTTAAAAGAGGAAGACATTTCGGATTATTACGAAATGGAAAACGAGAACGACGATGACGAGGAAATCGAGACACCGGCGACCGAAAGTGAGAAACAGGAAATATTCAAGTGCTTTCGTTGTGATTTTACAAGTCCCGACCGCGATTTATGGGAGGCTCATCAAAAGAGACACAAAAAAACCAAGCTAGCTAATTGTAAAATTTGCGGAAAATCAGTTATAAGTTACAACCTTAAAAGGCACCAACTGATTCATACAGAAGCACCGGTGAATTGCGAAATTTGCGGAACAGTTTGTAAGCATGAGGAATCGTTACGGTCGCACATGTTTACGCACAGGAGCGGTCCATATCCTTGTACAATATGTGGGAAAGTTTATCGACACAGACAAAGTTATAATGCTCACAAGAAACGACACACAAATTTGCCGAAGGTTCAAAAGAAATCTAAAATTTACAAGCAGGCTATTTGTAGCATTTGCGGAAAATCAGTTATAAGTTACAACATTAAAAGGCACTTACTGATCCACACAGAATCGCCGGTCACGTGTAAAATTTGCGGGAAAATTTGTAAGCACGAGGAATCGTTACGAGCGCACATGTATAAGCATAACAAAGGTCCATTCCAGTGCACGTTATGTGGGAAGGTTTATCGACACAGGCAAGATTACAACGCTCACAAAAAACGACACGAATCTGGTAACGCCAGGCCTATAGAATGTTTAACAtgcggaaaacgattttttaataagaacacgctgATCAAAATAATGGAATTTGAGTGCCGTACATGCTTAAAAGTGTTCTCCAACGTACGCAACATATTTTCCAATGATTTACCGCTGAAAATCGAAACCATATCGTCGGTTGAGATTCTAGACGACGACAGGTTTCCGTCTAAAATATGTGAAGAGTGCGTAAGAAACGTAACTCTGATGTACGAATTTTGTAAAGTTATTCAAACAAGCAACGTGATTTTAATGACACGCAGCATTAAGCAAGAAGCGGTCACCGTAACGGAAACTTATCAAAATGAAGACATTTTTGAAAGTAAAGGCAGGGAGTTGGAACTACAACGCAGTTTTAACGACGATGACAACGAGATTGAGACGCCTGGACTTGGAAGCGAGAAAACCGAAATATTTATGTGCATATTTTGTGATTTCACCAGTTCCGAGTATGATTTGTGGAATTGTCATCAAAAGCAACACAAATCTATTTGCAGCGTTTGCGGAAAATCTGTTTTAAGTTATAGTCTTAAAAAGCATTACCTGATCCACACAAACTCACAAGTGAAGTGTTTAATATGCAATAAAATGTGTAGACATGAGGAATCGTTACGGTCACACATGTCTACCAAACACAAATGTGGGCCATACCTCTGCACGATATGTGGGAAGGTTTACCGCCACCGGATAGGTTACTACAGTCACAAAAAACGGCACACAAGTAAGTGGTTGCATTTTCACCCAGTTCCGTAA
Protein Sequence
MELECRTCLQVSTQMSDIFSDDLPFKIQEISSVEISLDERLPSNICEECTRNVKLLYDFREIIRKNDMILRERLCKKENEEALDVHYDEIEFKTEDNFEFELEEDVKFTTDAEIRNEDEVVADDTKEGEKYKCDRCDFTCSLYNLWRNHKNTHKEVAKSMCNICGKSITSTNLRQHILVHTEPPVSCKICGKLVKNTESLRAHMYIHKGGPLQCITCGKIYKHRQGFYAHRRRHKHDLPHKIETIASVEVLEDDKFSSKICKECVTNVNQMYDFRKVVRSSNMILMKRCMKEEEEVALQNEDTVETELELKEEDISDYYEMENENDDDEEIETPATESEKQEIFKCFRCDFTSPDRDLWEAHQKRHKKTKLANCKICGKSVISYNLKRHQLIHTEAPVNCEICGTVCKHEESLRSHMFTHRSGPYPCTICGKVYRHRQSYNAHKKRHTNLPKVQKKSKIYKQAICSICGKSVISYNIKRHLLIHTESPVTCKICGKICKHEESLRAHMYKHNKGPFQCTLCGKVYRHRQDYNAHKKRHESGNARPIECLTCGKRFFNKNTLIKIMEFECRTCLKVFSNVRNIFSNDLPLKIETISSVEILDDDRFPSKICEECVRNVTLMYEFCKVIQTSNVILMTRSIKQEAVTVTETYQNEDIFESKGRELELQRSFNDDDNEIETPGLGSEKTEIFMCIFCDFTSSEYDLWNCHQKQHKSICSVCGKSVLSYSLKKHYLIHTNSQVKCLICNKMCRHEESLRSHMSTKHKCGPYLCTICGKVYRHRIGYYSHKKRHTSKWLHFHPVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-