Cruf012262.2
Basic Information
- Insect
- Cantharis rufa
- Gene Symbol
- -
- Assembly
- GCA_947369205.1
- Location
- OX376308.1:15836735-15845732[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.084 11 7.7 0.4 2 23 208 228 207 228 0.97 2 14 3.1e-06 0.00041 21.7 0.8 1 23 234 256 234 256 0.98 3 14 2.1e-06 0.00028 22.2 0.8 1 23 262 284 262 284 0.98 4 14 0.25 34 6.2 3.9 1 23 300 322 300 322 0.92 5 14 0.22 30 6.4 0.8 2 23 570 591 570 591 0.94 6 14 2.1e-05 0.0028 19.1 2.7 1 23 597 619 597 619 0.98 7 14 1.1e-05 0.0014 20.0 0.1 1 23 625 647 625 647 0.98 8 14 1.4e-07 1.8e-05 26.0 2.0 1 23 662 684 662 684 0.97 9 14 0.00048 0.064 14.8 3.6 1 23 707 729 707 729 0.96 10 14 1.5e-06 0.0002 22.7 0.5 1 23 734 756 734 756 0.95 11 14 0.00055 0.073 14.6 0.8 1 23 762 784 762 784 0.94 12 14 2.3e-06 0.00031 22.1 3.9 1 23 790 812 790 812 0.98 13 14 6.2e-08 8.2e-06 27.0 0.4 1 23 818 840 818 840 0.99 14 14 0.00022 0.03 15.9 3.9 1 23 846 868 846 868 0.98
Sequence Information
- Coding Sequence
- ATGGAGCAAAATTCAATACTGGAATGCAATACTAAAGATTTAATTTCGTTTAAAAATTTTGCCGAAATATGTCGCGTATGTTTATCTGAAGTAAAAGGTACTCCAATTTTTGACGTATTTTTTAAGGAGAAGAGAGTTACCGAGGTATTATCGTTACATTTGATAATAGAGGTGAATTTGGACGACATTCTACCGCAAAATATTTGTAATCGCTGCTGCGAGGAACTTCTCAGAATGTGTTCAATTATAGAAAAATGTCAAAATTCCGATGTTATTCTACACCGTTACGAAGAATACTTCTTAAAGAAGGAGGTAGGAGTGTACGATGAACTGATTAAAGAGGAAGAAATATCACAAGATTCTGAAAAAATTACCACCAAAGATGCGGATACAGAAGCAGAGCCAGAGTGCACCAATACAAAGAACATTAATAGCATGATAATTATAGAAGAATTGGATTGCACCCCTAATCAAATCAATGTCCAAAGTAATGCAAATGAAACAGAAGTTAGTGAGAAAGAAACCTCTAAAAACAATAGCTCCAAAATTTATAAACGCCAGTGTTCGCTAAATGCCACCACGAAACCTTTCAAAcgtaaaacaaaaaatgttcacaagagtcagtgtcccacatgtttacaagtctttttaacccgaacgcttgtgcaacatatgcgagttcacactaaagaaaaaccttatgaatgtcgagagtgttttaaagcgtttagtatgaacgcaaatttaaaaaggcatatgttgctacacaccggagaacgaccacatgtgtgtgaaatttgtgataaagGTTTCACTCAACTTGCTGGGCTTACAAAACATAGGCAAACACATATTTCGAATAAATGTATAACTGATGCTATCTCTAGACCTTCAAATTACACCTGCTCATTTTGTGGACGAAAATTTAAACTTCTAAAAGCTCATGATAACCATATAAAGAAACACACAAATGTTGAAAATGAAACAGCTAAAAATGAAGATAAAGTAACTAAAGAACTAATTGATAAAATCTATGAGTGCGCTACGTGTATGAATCGATTTGATAATACACGGTGTTGTTCTACTGTTGTTTCATTGGAAGAACAAGAGCAGGTCGATGAAAATGACATGAAAGAGAACATAACCATCGAATTTAATAACGAAGATCTTGTTTTGGTAAAAAACTTTTCGAAGATATGTCGTATATGTTTGATGGAAATGCAGGGCACTCCGATTGTTGATCTGTTTTTTGAAGATAAAAGGGTTACCGATATTTTATCGTCACATTTAGTAATAGAAGTTAATTTGGGCGATTTTCTACCACAAAATATATGCAATCATTGTAACGAGGAAATTCTTAAAATGTGTTCTCTCATAGAAAAATGTCAGAAAGCTGACGCTTTTCTACGAAGTTACTTCAAATTTATCCTCGAAGATGAACAAATAGAAATCAATGATGAAGAATTAATCAAAGAGGATTCTAGGAATTTAAATGAAAATAAAGTGGATGTAGTAGTTCAAGACATAGAAGTAAAAGATAGGCAGATAGGGGTTAATTATGTTGTCAATTCTTTAGAAAATAACATGGATCCAATTTTAAATAGTTTGCATAATGATGTTGAAATTTCTAAAAGGCAGGTGGAGGTAGTTCATAACAATTCAGACGTAGAAAGAGATGAAATTGCAGACGAGAAGGATAAAGACGAAcagtgtcctacgtgtttaaaatattttgctaagaaacgtttaaagcgacatattataatggttcatactgacaaatataaatttgaatgtcaggtgtgttttaaaacaattaaaagtaaagctcatttaaaaagacatatgatgatacacactggggaacacccttacatttgtgatatttgtggaaaagCTTACAGCCGACCTACAGGGTTTGCTATTCACAAAAAAACGCACGTTTCGTACGAAGAAATTGATCCTGAAACTGGAGTGCGGTGCTTTGCTTGTTCACATTGTGGAAAAGTATTCAGGCGATCGGCAAACTATAATGCTCACATAAAAAAGCATGAAAAGAAGGTGAATGAAGCAATCGAGAAAGAAAAAAAAGCATCTACCGAACAAAATGAAAAATTGCATTCTTGCTCCATTTGTAAGAAGAGTTACAAAATAAAATCTTCACTCTTCACACATCAGTTAGAGCATTgtgagaaggcatttttatgtaatacatgtggcaagcgtttcgtaagaaaagctgccttgcagcaacatttgattacacacagtgcagaaaaaccacacatttgtaaaatttgtcataagtcttttgcacgtatagtcggtttagaaatacattcactgattcatactcgccaaaaactacatgtctgtagtatatgtgaaaagtctttcacccaagccaaccatcttaagtatcatatgttgacacatacaggtgaaaaagcatatgagtgcacttattgtggaaaacgatttgcagtgaaaggaaatttgactgttcatgtgcgtacacacactggagaacgaccgtatatgtgtactgtttgtaataagaaattttATGACTCCAGCAGTAAGAAAAGGCATGAAAAGCGTCATAGAGAGTTAACCTTTTGA
- Protein Sequence
- MEQNSILECNTKDLISFKNFAEICRVCLSEVKGTPIFDVFFKEKRVTEVLSLHLIIEVNLDDILPQNICNRCCEELLRMCSIIEKCQNSDVILHRYEEYFLKKEVGVYDELIKEEEISQDSEKITTKDADTEAEPECTNTKNINSMIIIEELDCTPNQINVQSNANETEVSEKETSKNNSSKIYKRQCSLNATTKPFKRKTKNVHKSQCPTCLQVFLTRTLVQHMRVHTKEKPYECRECFKAFSMNANLKRHMLLHTGERPHVCEICDKGFTQLAGLTKHRQTHISNKCITDAISRPSNYTCSFCGRKFKLLKAHDNHIKKHTNVENETAKNEDKVTKELIDKIYECATCMNRFDNTRCCSTVVSLEEQEQVDENDMKENITIEFNNEDLVLVKNFSKICRICLMEMQGTPIVDLFFEDKRVTDILSSHLVIEVNLGDFLPQNICNHCNEEILKMCSLIEKCQKADAFLRSYFKFILEDEQIEINDEELIKEDSRNLNENKVDVVVQDIEVKDRQIGVNYVVNSLENNMDPILNSLHNDVEISKRQVEVVHNNSDVERDEIADEKDKDEQCPTCLKYFAKKRLKRHIIMVHTDKYKFECQVCFKTIKSKAHLKRHMMIHTGEHPYICDICGKAYSRPTGFAIHKKTHVSYEEIDPETGVRCFACSHCGKVFRRSANYNAHIKKHEKKVNEAIEKEKKASTEQNEKLHSCSICKKSYKIKSSLFTHQLEHCEKAFLCNTCGKRFVRKAALQQHLITHSAEKPHICKICHKSFARIVGLEIHSLIHTRQKLHVCSICEKSFTQANHLKYHMLTHTGEKAYECTYCGKRFAVKGNLTVHVRTHTGERPYMCTVCNKKFYDSSSKKRHEKRHRELTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -