Cruf012488.1
Basic Information
- Insect
- Cantharis rufa
- Gene Symbol
- -
- Assembly
- GCA_947369205.1
- Location
- OX376308.1:19012064-19014124[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.9e-08 5.4e-05 23.9 0.0 2 41 16 59 15 63 0.87
Sequence Information
- Coding Sequence
- ATGTCCAGAGGTCGCAAGAGAAAAAGTCAAAAAGGTACATTTTTAGAAGAAAATATGAGAAGCGCTGTGCGGCAAGTGATAATAGGAGAAGGTGGCGTAAAATTATCTCTCCGAAAAGCTGCAGCAAGAAATGGTGTGGCGTTTCAAACATTACAGagatatgttaaaaaagagcttgaaaagacaaatcccgatgagcaaatattaatgaaaactaactataaacaccgtttagttttcagtgaagaggaggagaaagagctagtaaagtatgttattacgtgctctaaaatgtgctatggaagaacaacgaaggacactcgtaaattggcgtacgagatggccaaaattaactctaaaagtataccatcaagttgggaaaaaaatcaatccgcaggtattgactggctacaagggttcctaaaaaggcacaataaagatttaagtattcggcagcccgaaggatgtagtctttcaagagcaacctcgttcaacgaatataatgtgaaattgttttttgacaatctccaaaaagcatatgaacgttccgaaaaattctctgacggcactcgtatatacaaccttgacgaaacgggcacgactactgtgcaaaaaccgaaaaaggttttgtcttccaaaggaactaagcaagtcagtcaatgtaccagtggcgaacggggagtattaataactacttgttgcataatcagtgctgctggaagtgctctgccacctgtcatggtgtttccccgaaaaaaattcaagcatcacatgttaaatggggcaccacccggtacattaggtctcgcatctccttccggttggatgaatggtgaactctttccattcgtgatgaaacacttcatacaatatagtggatcctctaaagaaacccctacacttctaatatttgataatcacgagagccatctcaccatagaggttcttaatttagcaaaagaaaacggggttacaattgtcacactacctccacattgcagccataagctgcaaccattggatacatcaatattcgcctcgttcaaggcaaattataatgctgctattgattcatggcttttgcatcatcctggaacaccactatccatttatgacgttgctgcttgtgtaggtgtggcatttgaacgtgccatgactccatcaaacataaagtcagggtttagaaaaaccggaatttttccgttcgaccgagatgtattcacggctgatgattttttaagtagttcggtcactaatagaGACATTTTAAATACTTCGTCAGTTTTATCCAACAGTGATAAGCAAATTGCATCAACATCGAGTGAAACACCAGGTTTTGTAGAAAATCTCCCTGATGAAATTTCTGAAGTTGCATCAACATCGTTTGAAGCATCTAACTTTGTAGAAAATCCCCCTGATAAAGTTTTTATTAGTCCTCAAGTATTTATGGGATATCCTAAAGCAGGGAAAAGAAAATTACAAAGTAGCAAGCGTAAAAGGGCCACCAGTTGTATTCCCACAGACACCCCTGAGAAAAAGAAAATCGAAATGAAACATATGGAGAAGAAAGAAAAAGAGAACCAGAAGAGAAAAAGACAAACTTGTAAGAAGAATTTGTTTTCTAAGAAAATTAAAGCTATCGCCAAGGATATATCTTCTGAGGAAGAAGATGAAGAAATTTCACTAATTGACAATTCCGACGATGAAGAAGCTGATGACTGGATGCCTGAAGTTGAACCTTCAGGTTTTGAAGAACTTGATAGAGATCCGGGACCAGATGACTTTGTTTTGGTGCAGTTCAAATCAAAAAATGATGTGCTATTTTATATTGCAAAAGTAGTGGAACTAAAAAAACCATCAAATGACATTGAAGTAAACTTTTTAAGAAAAGCTACAAAATTCGATGGTCATTTTATATTTCCATCTGTTCCGGATATTTCAATAATTGCACTCAAGGACATTAAAATGATTTTACCCGCACCATCGCTTCTGGGAAAAACAAAAAGACTACAATCTTATTATAAATTTGAAGTTAACTTCAACCAACTGAACATACGTTAG
- Protein Sequence
- MSRGRKRKSQKGTFLEENMRSAVRQVIIGEGGVKLSLRKAAARNGVAFQTLQRYVKKELEKTNPDEQILMKTNYKHRLVFSEEEEKELVKYVITCSKMCYGRTTKDTRKLAYEMAKINSKSIPSSWEKNQSAGIDWLQGFLKRHNKDLSIRQPEGCSLSRATSFNEYNVKLFFDNLQKAYERSEKFSDGTRIYNLDETGTTTVQKPKKVLSSKGTKQVSQCTSGERGVLITTCCIISAAGSALPPVMVFPRKKFKHHMLNGAPPGTLGLASPSGWMNGELFPFVMKHFIQYSGSSKETPTLLIFDNHESHLTIEVLNLAKENGVTIVTLPPHCSHKLQPLDTSIFASFKANYNAAIDSWLLHHPGTPLSIYDVAACVGVAFERAMTPSNIKSGFRKTGIFPFDRDVFTADDFLSSSVTNRDILNTSSVLSNSDKQIASTSSETPGFVENLPDEISEVASTSFEASNFVENPPDKVFISPQVFMGYPKAGKRKLQSSKRKRATSCIPTDTPEKKKIEMKHMEKKEKENQKRKRQTCKKNLFSKKIKAIAKDISSEEEDEEISLIDNSDDEEADDWMPEVEPSGFEELDRDPGPDDFVLVQFKSKNDVLFYIAKVVELKKPSNDIEVNFLRKATKFDGHFIFPSVPDISIIALKDIKMILPAPSLLGKTKRLQSYYKFEVNFNQLNIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00268147;
- 90% Identity
- iTF_00268147; iTF_00268150; iTF_00268151; iTF_00268153; iTF_00268154; iTF_00268155; iTF_00268156; iTF_00268157; iTF_00268158; iTF_00268159; iTF_00268160;
- 80% Identity
- -