Cruf009299.1
Basic Information
- Insect
- Cantharis rufa
- Gene Symbol
- -
- Assembly
- GCA_947369205.1
- Location
- OX376305.1:41499022-41502413[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-07 0.00016 22.4 0.0 3 44 33 74 31 75 0.86 2 2 0.0016 1.3 9.9 0.0 3 37 364 398 362 404 0.89
Sequence Information
- Coding Sequence
- ATGGATACCGAATTAGCTCTTCGCTCAAAGCTCAAAAAATGTTTAAAAAAAAATCAGAAAAGAAAAGCTCCTAGAGAATTTTTTGATTATTCTCAAGAGAGCTTAGAGCTGGCAATGAGAGATGTAACGGAAAATGGTGTCTGCAAATATAGGGCCGCAAAAAAGTTTGGTATTCCCCGCAGTACACTGATAAGAAAACTTTCTGGAAAAAGCTCTTTGGGCAGGAGAATGGGTCCGGAAACGATTCTGAAAGAATCGGAAGAAAAGATACTGGAAGAATGGCTGCTTGCCATGTGTAGAAAAGGATTTCCAATGCAAAGATGTAATCTCTTGCTGACAGTTCAAAAAATTGTGGAAGAATCAAAACGAAAAACTTGCTTTAAAGAAGGTATGCCCGGTCGCACCTGGTTCAAAAGTTTCTTGCGGAGGCATCCAAATGTGAAACTGAAATATACCGAAAGCGTTGCCAAAGCTCGTTCTGCTGTAACTAAGGAAGGAATCGAAAGATGGTTTTCTGATGTGCTGCAATATTTAAAAGAAGAAAATCTGGAAGACATCCTTCATCATCCAAACAGGATATTTAATGGCGCTGTATGTGATTTCCCATTGGATCGACAAAATAGAACAGTATTAGGTCCGGCCAAATGCACTGAAGATATTTACGAAAGAACCCCAAATATCGATAAAAAACAAGTGGCAGTTATGGCGACATGTTCCGCCAGCGGCGAATCAATTGATTATAATAGTAAGTGGATTAACAAGGGAACCATAACCTGTTCTCATGTTAATCGAAAGGATAATTCCCAAAATTATCTGGAAGATATACTGTCAGAAATAGAGAAGAGAATTGGCCCTGAAGAATTAATTCGATTTAAAGATACATATTACAACAACGACGAGTGGTCGTGCAAAATTGAATCGGAAGATTTATATAACTTTTGGTCTAAGGCCAAGAGAGATCTTGAAAGCAGCAAAGGCGATTCCGTACAGCAAACTGAATGTAAATTTTTGGATGAAAGTCAAAATGACGTTAAGTATATAGTTGAGTCCTTCATGCAGCGACCATGTAGGAGAATTCCCACGTCTTCGGAAGTAATGAAAGCTGCAGTCAAAGAAATTATTAAAGGCGGCTGTAAGCTTCGTACAACTGCGAAAAAATACAATATAGATAAAATGACTTTGCGAAGATACGTCTTAAAGTACAAACAGCATGGGGATGATACAAAATTTGTTCCAAATTTTAAATTTTCCCAAATCTTTACCGACCAAGAGGAAGAGAGTTTGGCGGATTATCTATTTGAGGCTTCCAAAATGAACTATGGATTGACCTCGAAGGATATCCGCACATTAGCTTTTGGATATGCTTTGGAGCACCAGAAGAAATTGCCGGCCAACTGGTTAAAAAATCAAGCTGCATCGTATGATTGGTTGCGTGGATTTATGAGCAGAAACACAAAGTTATCGTTGCGAACACCGGAACCCACGCGTCTTGGTCGTAAATCTACATTCAATGAGCAGACCGTGGAAAAATTTTTTGAAATATATGGCGAGATTTGGGATCGGGAAAAATTGCAGCCTCGTTTGATATATACCTACGATGAAACTGTTTTACAGACGGCCTATAGACCAAGCAACATGCTTTCCCAAAGACGTGTTTCAAAGGAACTAGTAGAAACTGTGACAGTTTGTGGTGCTGTTAATGCTATCGGTAACTCTGTACCACCAATGCTTATTTTCCCACGTGAGAGAGAAGAAGAATACATGACACGAGGTGCTCCTCCATGTGCTCAAGTCGTTGCTGATCCTGGTGGTTCGATGACCGTGGAGAATTTTGAGAAATATTTATCTCATTTCGTTAAATTCGTAAGATGTACCCCGAAAGAGAGAGTTATACTTATACTAGATAACCATACCAGTCATATTTCGTCCAAAGTTTTCAAATTTTGTAAATCTAATGGCATTATATTGTTTACAATACCACCGCATACCAGCCATAGATTACTGCCACTGCAAATTTCTGTATTTAGGCCATTTAAAACTTTCTTCGCCCATGCATGTCATAACTTCATGATGAATCATCCAGGAGAAACTGTTACTTTGAAAAATATAACTCCACTAATAAATGAAGCTTTTTTAAAAGCTTTTCGTGCTTTATTTATTTGTCAAGGTTTTAAACGCACAGGATTATATCCTTTTGATCCCTACATTTTCACTGAGTATGATTTTCTCAGTGAAACCTTCATTAATCTACCTGAAGTTTTACGTGAGGATACACCAGAATCTGAAGTAACTGACGCTATAGCTGAACCTTCAGAACTCGATTCAAAGCCTTCCAGTCCAACCGACATAATACCATTTACTAAATCTGAAAACGGAGGAATGCAACTTCTTAAATCAGAAATATGGACAGATACTTTCAATTTTGAAGAAATAAAGGAAGAGATGATATGA
- Protein Sequence
- MDTELALRSKLKKCLKKNQKRKAPREFFDYSQESLELAMRDVTENGVCKYRAAKKFGIPRSTLIRKLSGKSSLGRRMGPETILKESEEKILEEWLLAMCRKGFPMQRCNLLLTVQKIVEESKRKTCFKEGMPGRTWFKSFLRRHPNVKLKYTESVAKARSAVTKEGIERWFSDVLQYLKEENLEDILHHPNRIFNGAVCDFPLDRQNRTVLGPAKCTEDIYERTPNIDKKQVAVMATCSASGESIDYNSKWINKGTITCSHVNRKDNSQNYLEDILSEIEKRIGPEELIRFKDTYYNNDEWSCKIESEDLYNFWSKAKRDLESSKGDSVQQTECKFLDESQNDVKYIVESFMQRPCRRIPTSSEVMKAAVKEIIKGGCKLRTTAKKYNIDKMTLRRYVLKYKQHGDDTKFVPNFKFSQIFTDQEEESLADYLFEASKMNYGLTSKDIRTLAFGYALEHQKKLPANWLKNQAASYDWLRGFMSRNTKLSLRTPEPTRLGRKSTFNEQTVEKFFEIYGEIWDREKLQPRLIYTYDETVLQTAYRPSNMLSQRRVSKELVETVTVCGAVNAIGNSVPPMLIFPREREEEYMTRGAPPCAQVVADPGGSMTVENFEKYLSHFVKFVRCTPKERVILILDNHTSHISSKVFKFCKSNGIILFTIPPHTSHRLLPLQISVFRPFKTFFAHACHNFMMNHPGETVTLKNITPLINEAFLKAFRALFICQGFKRTGLYPFDPYIFTEYDFLSETFINLPEVLREDTPESEVTDAIAEPSELDSKPSSPTDIIPFTKSENGGMQLLKSEIWTDTFNFEEIKEEMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -