Cruf001030.1
Basic Information
- Insect
- Cantharis rufa
- Gene Symbol
- -
- Assembly
- GCA_947369205.1
- Location
- OX376309.1:13417257-13434171[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4 5.1e+03 -1.6 0.0 28 35 42 49 41 51 0.84 2 2 8.9e-13 7.1e-10 39.5 0.0 4 40 102 139 100 142 0.92
Sequence Information
- Coding Sequence
- ATGGTCTCAAATTCCAACGGGCGAGATAGCGCTAACCATTTCCAAGCAAGTATATGCAAGATTCGACAAGGTTACATCGTGGAGTGGGAATTTAACCAAGAGAATTGCTTGAAGCAGGACAGTCTACCGGAGTCTACCCTGGAGCGCGGGCGGACCAGTGTGGTCGCGTTAGCTCCTTGGGGGGTAGAACCCATTGTGACTTTGAGTTACCGTTATGCGCAAGTACCGAATACCGCTTACAGTGCAAGTATGCGTAAATATAGTGCTACGCACAATCATCGTGATACCGTTTACCGCGCAAAAGATTTAGAAAATGCATTGGAAGATATTATGTCGGAGAGGTTGTCTTTGCAGCAAGCTGCCGACACTTACGGCATTTCAAAATCTACCCTTTCGAGGAAGACAAAAAAGTTACACGCAAAGCCATCATTTGGTGGCCAATGTGCTTTACAGGAGACTGAAGAGGATTCACTTGCTCAGACAATTTTGTACGCAAGTGATTGGAGATTTCTTCTAGACAAAGAGGACATTAAGGAACTAGTCCAAAACTACTTTAACAGACAGGAAGAAGCCTTAAGCAATTTACTAATAACAGACCTGGAAACAGCTGGTATTATCGTTTCATTCAACGAAATATAG
- Protein Sequence
- MVSNSNGRDSANHFQASICKIRQGYIVEWEFNQENCLKQDSLPESTLERGRTSVVALAPWGVEPIVTLSYRYAQVPNTAYSASMRKYSATHNHRDTVYRAKDLENALEDIMSERLSLQQAADTYGISKSTLSRKTKKLHAKPSFGGQCALQETEEDSLAQTILYASDWRFLLDKEDIKELVQNYFNRQEEALSNLLITDLETAGIIVSFNEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -