Cruf017442.1
Basic Information
- Insect
- Cantharis rufa
- Gene Symbol
- bab2
- Assembly
- GCA_947369205.1
- Location
- OX376303.1:41981658-41984033[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.2e-16 4.9e-13 49.6 0.0 2 42 364 405 363 408 0.94
Sequence Information
- Coding Sequence
- ATGACTATGCAACAATATtgtctacggtggaataatcatcagccaaattttatttcagtattttcaagtcttttaaataatgaatcattggttgatgtcacattagctgccgaagggagacatttacaagctcacaaagttgttttatccgcttgtagttcatattttcagtcactgtttactataaatccatgccagcatccaattgttatcttgaaagatgtaaaatttttagatttgaaagttatggttgattttatgtattatggagaagttaacgtatctcaagatcaattgccacatattttaaagactgctgaaatgttgaaaattaaagGTTTAGCAGAAATCCCTGTAGAACAATCGGCTCTTACCAAATCTCAGAGTAGTTCAACTGAACGAGCAGAATTATTAACTCCCGGTGACTCCAATTGGAGTTCAGAAGATGTACAAAGACAATCTTTATCATCTTCACCTTGCCCATTATCACCTGCTAGTAAGCGCAAAAGACTAAGAAAAACCTCGACAGGCTCAGGCTCTGGATCTACAGAACGCATGTCAGAGGAACACGCAACAACCGAAGTAACCACAATGTCATCCCCGATGGGGAATACCCTTGGAACTGTGATAAAACCTGACCCAGGTAGTTTTATTACCGAAAGCAGTAATCCACTACGTGTTAAGCAGCATAGTAGTGATTCAGAACTACAAAGAGGTAGTTCACATGAAAGTATCGAAGGAGAATCTTCTCATCAAATTACATTGCAAATTCCCCAGCAAGATATGTCGCACAAACTTGAATCCACTATTGATATCTCTGGAGGGGCATCGATTTCTCAAACTCAACCAGGATACCAATGGGGAATTGTCGATGGATCATATTCACGTTTTCCTCTTCCAACATGTCAACCCAATATTGCTACACAACTTGACCTCAATTACACCACCACAACAATACCTCAATGCACAATGGACAGCAACTTAACATCTACTTCTGAAACATCCACTAGTACAGTTAATCACAACCACATAGCGGTATCTCCAACGCAATTGATTCAAAAACGAAAAAGGAGTATTAATCCTCAATCTGACGAAAATTTTGTACGTGCATTAGAAGCTGTACGGTTTGGAGGAATTGGATTTTGTAAGGCTGCTAAAATGTACGGCGTCAATAATCGTACTCTATGGTTGGAATATAAAAAGAGAGGATACCCTAACAACAGGATAAGTATTAAAAATCGTAAGCAAGAATATATTAACTCGGCCGGTGTTAGTCAAAATCCCACAAGTCCTATTGCTACTACCTCCAGTGATCAAGAAAATGACTTAATATGTGAAGCTGTCAATCATCCAACTACTGCTATTATCAGTGGAACGTATTTAGACAGTCGTCATGTTGATTTATCTCCCATTTTACCAAGACCTCGATATCTAGATACTGTTAGTGTTAATGCTCAACACACGCTAGGTTTATCGGGAGTCACTTTCGAACAAATGTGA
- Protein Sequence
- MTMQQYCLRWNNHQPNFISVFSSLLNNESLVDVTLAAEGRHLQAHKVVLSACSSYFQSLFTINPCQHPIVILKDVKFLDLKVMVDFMYYGEVNVSQDQLPHILKTAEMLKIKGLAEIPVEQSALTKSQSSSTERAELLTPGDSNWSSEDVQRQSLSSSPCPLSPASKRKRLRKTSTGSGSGSTERMSEEHATTEVTTMSSPMGNTLGTVIKPDPGSFITESSNPLRVKQHSSDSELQRGSSHESIEGESSHQITLQIPQQDMSHKLESTIDISGGASISQTQPGYQWGIVDGSYSRFPLPTCQPNIATQLDLNYTTTTIPQCTMDSNLTSTSETSTSTVNHNHIAVSPTQLIQKRKRSINPQSDENFVRALEAVRFGGIGFCKAAKMYGVNNRTLWLEYKKRGYPNNRISIKNRKQEYINSAGVSQNPTSPIATTSSDQENDLICEAVNHPTTAIISGTYLDSRHVDLSPILPRPRYLDTVSVNAQHTLGLSGVTFEQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00268705;
- 90% Identity
- iTF_00268705;
- 80% Identity
- iTF_00272907;