Cnig012493.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294029.1:43085146-43087795[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0026 0.14 13.5 0.3 1 23 86 108 86 108 0.97 2 11 0.0075 0.39 12.1 2.8 3 23 116 136 114 136 0.98 3 11 0.019 0.99 10.8 1.5 3 23 144 164 142 164 0.97 4 11 0.00031 0.016 16.4 3.9 1 23 170 192 170 192 0.97 5 11 0.0073 0.38 12.1 0.8 1 23 219 241 219 241 0.98 6 11 0.00014 0.0073 17.5 1.6 1 23 247 269 247 269 0.97 7 11 0.00078 0.041 15.2 1.9 1 23 275 297 275 297 0.96 8 11 7.4e-06 0.00039 21.5 0.9 1 23 303 325 303 325 0.98 9 11 0.023 1.2 10.6 1.8 1 23 331 353 331 353 0.97 10 11 0.047 2.5 9.6 0.7 1 23 359 380 359 380 0.97 11 11 0.00017 0.0091 17.2 1.2 1 23 414 436 414 436 0.97
Sequence Information
- Coding Sequence
- ATGGATCAAATAGCCACAGAGAAAGTAAAAATCACATTTGATATTAAAGTGGAAGAAGACATTGACATCAAGTTGGAGGATTTGCATCACTCAATTGACATAAAAGATGagttttcaaattcaaatggtCAATCCGATGAAGACAGGAAGGTAGACGAAATAAAGCATTTTGGATGTGAAAGTTATAACTACAAAAGTTCAAGTAAAAATGATTTGAATGTACATAATAGGAAGATTCATGTCGACCAAAAACCGTTTTTCTGTGCAGTATGCGGATTTAAAGCAATATATAAATCAGCCTTAAAGCAACACATTAAAATTCATTCCGGTGAGAAGTCCTATGGATGTAATACTTGTGAATATAAATCCACTCGGAAGCAACACTTGGTAGATCATTTGAAAACTCATACGGGCGTGAAACCATTCGGGTGTGATTTGTGTTCTTTTACATGTTCACGTAAAAGATATTTAGCAATCCATTTGCTTGTGCATACCAAAGAGAAACCGTTTCCATGCAAAATCTGCGACTGTAAGTTTGCACATAAAGGATCTTTACGGTATCATTTGAAAGCTCATTCTAAGAAGATCTTGTTGACTTCTGGAAGTACaataaagttaaataaagtTGTACAAATACAAACTAACAAGGAACCTTTTAGCTGTGAAATATGCGACTATAAAACAATGTATAAATCCAGTTTTGTTCTACATGTAAAAATTCACACCGGTGAGAAGTCGTTTGCATGTAatatttgtgactataaatgcaTACGAAGGGAATACTTGGAAAATCACTTGAAAATTCAcactggcgaaaaaccattcGCGTGTGACCTGTGCGATTATAAATGCTCACGTAAGAGATACTTGGTAACCCATATGGTAGTTCATACCGGTGAGAAACGATATGTGTGCGAAATTTGCGGTCGAAACTTCGGACATAAAGCATCATTGAGGTATCATTTAAAAGTTCACAATGCgggaaaattatttacttgtgaAATTTGCGAATATAAAACTACAATCAAAACTTACTTACATGATCATATGATACTTCATACGGACGGGAAACCATTTGTGTGTTCAGTATGCGACTACAAAACAGAAGAATCGCGtttaaaacggcatttaaagGTCCACGATACGAAGAAGTCCTTCTCGTGTAAtttttgtgactataaatgttcaCACAAAGCTCGTTTGATATGTCATTTTGAAACTCATACGGGGGCCAAACCATTTGCATGCGATATATGTGACTATAAATGCTCACGTAAAGCATACTTGCTTACTCATTTATTGGTGCAcaccgACACTGGAAAATGTATCAGTTGGGTTACAGAAGCCAAAAAACTGTGCTATCCATCCCATACGATTATTACTATCACGGAGAGCAAAGCAGAAGTTCAGTTACAGGCTTTGTTGGACCATACAGTTCAGCGTAATCTATTACGTTCAAGTCTAGCCAACGAGAATGTTAAAAAGATGTCACTCATTTGCAAGTGGGGTTGCGATGGAAGCTCTGGACTTCTGGACAGAGTGCATATAAGCAGAAATTTGAAGATAACAACATTTCGGATACAAATGTGTTCTTCACTTCGGTTGTGTCTTTACAACTCGTATCTGTCGATTGATTGTCAATCGCATACCGAAATTGTGATTTGGAAGAACCCTAGGCCTTCGTTTCCTCGATTCTGTAGAACACTAAGATTACAGTTTCTGCACGAAAACACCTATTCAACAGTCGACGAGGAACGCTACATTAACGATCAGATAAAGACACTTGTTTCTTACGAAACAATCATAAATCTCAGTTGA
- Protein Sequence
- MDQIATEKVKITFDIKVEEDIDIKLEDLHHSIDIKDEFSNSNGQSDEDRKVDEIKHFGCESYNYKSSSKNDLNVHNRKIHVDQKPFFCAVCGFKAIYKSALKQHIKIHSGEKSYGCNTCEYKSTRKQHLVDHLKTHTGVKPFGCDLCSFTCSRKRYLAIHLLVHTKEKPFPCKICDCKFAHKGSLRYHLKAHSKKILLTSGSTIKLNKVVQIQTNKEPFSCEICDYKTMYKSSFVLHVKIHTGEKSFACNICDYKCIRREYLENHLKIHTGEKPFACDLCDYKCSRKRYLVTHMVVHTGEKRYVCEICGRNFGHKASLRYHLKVHNAGKLFTCEICEYKTTIKTYLHDHMILHTDGKPFVCSVCDYKTEESRLKRHLKVHDTKKSFSCNFCDYKCSHKARLICHFETHTGAKPFACDICDYKCSRKAYLLTHLLVHTDTGKCISWVTEAKKLCYPSHTIITITESKAEVQLQALLDHTVQRNLLRSSLANENVKKMSLICKWGCDGSSGLLDRVHISRNLKITTFRIQMCSSLRLCLYNSYLSIDCQSHTEIVIWKNPRPSFPRFCRTLRLQFLHENTYSTVDEERYINDQIKTLVSYETIINLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -