Basic Information

Insect: Cantharis nigra
Gene Symbol: -
Assembly: GCA_958510845.1
Location: OY294029.1:47618222-47634692[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.3e-05 0.0012 20.0 1.6 1 23 224 246 224 246 0.99

2 11 0.0004 0.021 16.1 6.2 1 23 252 274 252 274 0.99

3 11 0.71 37 5.9 0.5 8 23 278 293 277 293 0.96

4 11 0.00062 0.032 15.5 0.3 1 23 299 321 299 321 0.98

5 11 0.014 0.71 11.3 3.4 1 23 327 349 327 349 0.99

6 11 0.0095 0.5 11.8 0.2 1 17 355 371 355 372 0.95

7 11 0.00065 0.034 15.4 1.0 1 23 428 450 428 450 0.98

8 11 0.0084 0.44 11.9 3.7 2 23 457 478 456 478 0.97

9 11 1.4e-06 7.4e-05 23.8 2.0 1 23 484 506 484 506 0.98

10 11 5.7e-06 0.0003 21.9 5.2 1 23 512 534 512 534 0.99

11 11 0.024 1.2 10.5 1.1 1 21 540 560 540 561 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.3e-05	0.0012	20.0	1.6	1	23	224	246	224	246	0.99
2	11	0.0004	0.021	16.1	6.2	1	23	252	274	252	274	0.99
3	11	0.71	37	5.9	0.5	8	23	278	293	277	293	0.96
4	11	0.00062	0.032	15.5	0.3	1	23	299	321	299	321	0.98
5	11	0.014	0.71	11.3	3.4	1	23	327	349	327	349	0.99
6	11	0.0095	0.5	11.8	0.2	1	17	355	371	355	372	0.95
7	11	0.00065	0.034	15.4	1.0	1	23	428	450	428	450	0.98
8	11	0.0084	0.44	11.9	3.7	2	23	457	478	456	478	0.97
9	11	1.4e-06	7.4e-05	23.8	2.0	1	23	484	506	484	506	0.98
10	11	5.7e-06	0.0003	21.9	5.2	1	23	512	534	512	534	0.99
11	11	0.024	1.2	10.5	1.1	1	21	540	560	540	561	0.93

Sequence Information

Coding Sequence: ATGGACAGGGCGATACTTATGGAagagtttaataaatttgaagaaagtACCAATGGTTTGCAAGCTTCCGGTGATGGTTACAACGATAACGAATTTACATTGGACGAAATGGATGACATGGAAGTGGAGTTAGAAGACCTGCACCATTCCATTGATATTAAAGATGATCCGAATTTAGATTATCAACAGGATAGTAACGAGATGGCGACACTTCAATATGTCGCCAATTATATTACCTGCAATCCAGATAAATCCATTCACAAAGCCAAAATGACATACTTCAACCGCTACGGAATCGTCTACCACCGTAGCACCGGACTCATCGCAACACCGCTAACCAGCGGCCTTCGAAGcaaGAATCACTTCCATCACGACTTGCCTCGCGCAAACCCAGGGGACTCCACCCTGCAATCCAAACCGTCAACCAACCCACACGAGATGAAGGAGATATGGGTTCACCCCGGCACTCCGCAAACGAAGCAAGATTTAAGAATGACATACTTGCCAGATTGTTGGACATTGGAGACTCCCTGTCTTTCAAATAGCTGTGTCCAAATTAAGGTAGAGGAAGAAATGCAGTTTATTAAGTTGGAAGATTTACATCATTCCATCGATATTAAAGAAGAGCCTACTGATTTAGATAGCCAACCAACGGCAGATGGAAATCCTTTTACATGTGGTATTTGTGGCTACAATTCGTCATCAAAAGCATACTTTAAGAAACATTTAAGAACTCATTCCGATGAGAAACCGTTTAAGTGCACCATATGTGACCACGTTTCAACACACAAAAGAAACTTCAAGATTCATTTAAGAAGTCATGCTGGAGAGAAGTcgtttacatATCAGACGGTTTTTAAAAGACATCTAGCCACGCATACTCGAGAGAAACCGTTTTCCTGTGAAACTTGTGAATATAAAGGCGTAAATAGAGAAGCTCTAAAAATTCATATAAGAACTCATACTGGGGAGAAACCGTTCCAGTGTGAATCTTGTGACTTTAAATGTGCCAATAAGGctagtttaaaatttcatataagaactcatactggcgagagtCCCTATCAGTGTGAAGTCTGCGGCCATACAACAAAACGTAAAGGAGATTTAAAGGAAACTCCATCTCATTCGAATAGCGGTTTccaaattaaaacagaaaaagaagaaatggaatttattaagttggaagatttgcatcattccatcgacattAAAGAGGAACCGAGTGTTTTCGACTATCAATCGGATACAGGACGCACACCAACATCGAGGGATCAACCGTTtacatgtgaaatttgtgactacaAATCAGTATATAAAACttcttttgaaaaacatttgatGATTCATACAGACAAAAATCCTCTTAAGTGTAAATTATGCGACCATATTTCCACTCGTAGAAGAGATTTCAAGGTTCATTTAAGAAATCATACCGGAGAAAAGTTGTTCACGTGTGAAGTTTGTGGGTATACTTGTGCACGTCCGGATAATTTAAAAAGACATTTTAGAATGCACACTGGGGAGAAACCGTTTACATGCGATCTCTGTGGTCATAAATTTGCCGATCAAACACATTTGAAAAGGCATTTGAAAACtcacaccggggaaaaaccaTTTGCGTGTGAAACTTGTGAGTATAAATGTGCAGATAAAGCTACGTTGAAAATTCATATCCATCGACCGCGGAGGTTTCGGTGTTCTCCCTCTCAAGCTGTGGTGCCTGTTCGTGGACGACCTTCTGTGGGAGCTTGA
Protein Sequence: MDRAILMEEFNKFEESTNGLQASGDGYNDNEFTLDEMDDMEVELEDLHHSIDIKDDPNLDYQQDSNEMATLQYVANYITCNPDKSIHKAKMTYFNRYGIVYHRSTGLIATPLTSGLRSKNHFHHDLPRANPGDSTLQSKPSTNPHEMKEIWVHPGTPQTKQDLRMTYLPDCWTLETPCLSNSCVQIKVEEEMQFIKLEDLHHSIDIKEEPTDLDSQPTADGNPFTCGICGYNSSSKAYFKKHLRTHSDEKPFKCTICDHVSTHKRNFKIHLRSHAGEKSFTYQTVFKRHLATHTREKPFSCETCEYKGVNREALKIHIRTHTGEKPFQCESCDFKCANKASLKFHIRTHTGESPYQCEVCGHTTKRKGDLKETPSHSNSGFQIKTEKEEMEFIKLEDLHHSIDIKEEPSVFDYQSDTGRTPTSRDQPFTCEICDYKSVYKTSFEKHLMIHTDKNPLKCKLCDHISTRRRDFKVHLRNHTGEKLFTCEVCGYTCARPDNLKRHFRMHTGEKPFTCDLCGHKFADQTHLKRHLKTHTGEKPFACETCEYKCADKATLKIHIHRPRRFRCSPSQAVVPVRGRPSVGA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -