Basic Information

Insect: Cantharis nigra
Gene Symbol: -
Assembly: GCA_958510845.1
Location: OY294029.1:49874552-49889939[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00067 0.035 15.4 5.4 3 23 343 363 341 363 0.97

2 12 9.4e-06 0.00049 21.2 2.1 1 23 369 391 369 391 0.98

3 12 0.0013 0.067 14.5 3.5 1 23 397 419 397 419 0.99

4 12 0.78 41 5.7 0.7 1 13 425 437 425 438 0.91

5 12 0.02 1 10.8 4.8 1 23 498 520 498 520 0.98

6 12 3.5e-05 0.0019 19.4 0.4 3 23 528 548 526 548 0.98

7 12 0.0035 0.18 13.1 1.8 1 23 554 576 554 576 0.98

8 12 0.00094 0.049 14.9 1.2 1 23 582 604 582 604 0.98

9 12 0.00011 0.0055 17.9 1.4 1 23 610 632 610 632 0.97

10 12 0.00085 0.045 15.1 0.9 1 23 638 660 638 660 0.98

11 12 0.00054 0.028 15.7 1.6 1 23 666 688 666 688 0.99

12 12 0.0031 0.16 13.3 1.0 1 23 694 716 694 716 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00067	0.035	15.4	5.4	3	23	343	363	341	363	0.97
2	12	9.4e-06	0.00049	21.2	2.1	1	23	369	391	369	391	0.98
3	12	0.0013	0.067	14.5	3.5	1	23	397	419	397	419	0.99
4	12	0.78	41	5.7	0.7	1	13	425	437	425	438	0.91
5	12	0.02	1	10.8	4.8	1	23	498	520	498	520	0.98
6	12	3.5e-05	0.0019	19.4	0.4	3	23	528	548	526	548	0.98
7	12	0.0035	0.18	13.1	1.8	1	23	554	576	554	576	0.98
8	12	0.00094	0.049	14.9	1.2	1	23	582	604	582	604	0.98
9	12	0.00011	0.0055	17.9	1.4	1	23	610	632	610	632	0.97
10	12	0.00085	0.045	15.1	0.9	1	23	638	660	638	660	0.98
11	12	0.00054	0.028	15.7	1.6	1	23	666	688	666	688	0.99
12	12	0.0031	0.16	13.3	1.0	1	23	694	716	694	716	0.99

Sequence Information

Coding Sequence: ATGAATATATCGGAACTTTCAGAAGAATTCGAAAATGTCGAGAgagtaattaaaaaagaatacaTCGAAGACGATGATACCAAGCTAGAAGAATTTAGTCAATTAATTGATATCAAAGATGAAACTTCAATTGGAGGAGTTGTATTTTCAAAAGATTTGAAAACTCTAACCAAAGTAATTGGAACGGAGGAATCGGATATCAAGCTAGAAGACCtgcatcattccatcgacattAAGGAAGAGACTTCCATTATTATTAACGAATCTGAACTGGATCAAGATTGCAATATACGAATATGTTGGGCGTGTAACCCAGGATTAACTAATAAATTGCCGCTTCGGAAACATGCAAGACTTCAACGCAGGGAGAAATTTCTTCAATGTAATGTGAATCCTACAGTGTATAAATGGTGTGCAGTCCCGCAGTGCAATAACACATCAATAAAAAATACTGGGAAGTTGTTTATTCACGCTCCACTCCAGAAAGCACTGCGAGAGAAGTGGCTTAGTCTTGCAGGTCGAGATCCATCATCTGTTTCTATGAAATCTAGAATCTATTTCTGCGAAGATCACTTTGATTTGCCAAATGATATGGACAATTTTATGAAGTATCATGTGATGGGATCGGTGTCTCAGATCCGCATGAAACCAGGaaaaaagaaagaaacaaTTGAAgaatgtgaaaaatatttagaagaaaaaaGTATTACCACGAAGAATTTGGAACTGGGAGCGACTTCATCCGGAAGTTCAGttttacaTGCAACAGAAAATATTGCGGTAGAAGAAGCACATAAGACTGAGAATAAATCAATCCAAGTACACATGACGCCCAAGTTCAGAAGTGAAGCCATTCGAACAGAATCCCCAAGCCAGTCAGATGATTGCTCTCCGATTAAGATGGAGGAAGTCGAAGTCAAGTtggaagatttgcatcattcgATCGATATTAAAGAAGAGATTGCTATACTGGAATGTAATCCGGAAAAGGAAATCAAACCAGAGACAAGCGGAAAATCGTCCATTTGTGGAATTTGTAACTATAAATGCACCCACAAggggaattttaaaaatcatttgcGAACACATACTGGGGAGAAGTTGTTTAGTTGTGATATTTGTGACTATAAGTGTGCACGTAAGGACAGCTTGAAcattcatttaagaactcacacTGGCGAAAAGCCCTTTACCTGTGAAATATGTAGCTTTAAATGTGCACGTAAGGAAAGACTAAAAATTCACTTAAgaactcacaccggcgaaaagCCATTTGCATGCGAACTCTGtggatttaaattttcacataaaGAACCTCCATGCCAAATTAAGACAGAATTAATAGAAATCAAGTtggaagatttgcatcattcgGTTGACATTAAAGAAGAGCCTTCGGATACAGAATACAGAACCAAAACTACCTGTCAAGTTTGTGCCTACAAATCTAAACATACAGGAGAGTTAAGGGCTCGAACTGACGAGAAAACGTTCGAATGTGACTCGTGCGACTACAAATGTGCACGTAAACAACATTTTGTAAATCACATAAGTAGtcacactggcgagaaaccgtttggttgtaaaatatgcaattataattttgcaCGTAAATCACAATTGGCTATTCATGCCAGATCTCACACCggtgaaaaaccgtttgaaTGTAAAATTTGCGAGTATAGATGCGCACGTAAAGGAGATTTGGCATTCCATTTAaggactcatactggcgagaaaccattttcCTGTGAAGTTTGCGATTACAAATGCAGACGTAACATAGAATTAATTATTCATTCTAGGATtcacactggcgagaaaccgtttgcgtGTGAGGTTTGCGGCTGTAGCTTCACTCGGAGACAAGTTTTAAAAGTACATTTAAGtactcataccggggaaaaaccgttttcCTGTGAACGTTGCAATTTGAAATTTGCATATGTACAACAATTGAAAATTCACGTCAGAACGCATACTGGGGAGAAGCCGTTCACGTGTGATATGTGTGGgaataaatatgcactaaagcATGGGTTGAAGATTCATCTGCGGACCCATACGGGCGAGAAGCCGTTCAGGTGTAAAATTTGCAGTTATAAGGCTGCACAAAGGCAAACTCTGGATGCACATATGAAAAGGCATATCGGAGAGAAAAATCGACCTGTGAAAGTTGAACCGTCAAGTGCATaa
Protein Sequence: MNISELSEEFENVERVIKKEYIEDDDTKLEEFSQLIDIKDETSIGGVVFSKDLKTLTKVIGTEESDIKLEDLHHSIDIKEETSIIINESELDQDCNIRICWACNPGLTNKLPLRKHARLQRREKFLQCNVNPTVYKWCAVPQCNNTSIKNTGKLFIHAPLQKALREKWLSLAGRDPSSVSMKSRIYFCEDHFDLPNDMDNFMKYHVMGSVSQIRMKPGKKKETIEECEKYLEEKSITTKNLELGATSSGSSVLHATENIAVEEAHKTENKSIQVHMTPKFRSEAIRTESPSQSDDCSPIKMEEVEVKLEDLHHSIDIKEEIAILECNPEKEIKPETSGKSSICGICNYKCTHKGNFKNHLRTHTGEKLFSCDICDYKCARKDSLNIHLRTHTGEKPFTCEICSFKCARKERLKIHLRTHTGEKPFACELCGFKFSHKEPPCQIKTELIEIKLEDLHHSVDIKEEPSDTEYRTKTTCQVCAYKSKHTGELRARTDEKTFECDSCDYKCARKQHFVNHISSHTGEKPFGCKICNYNFARKSQLAIHARSHTGEKPFECKICEYRCARKGDLAFHLRTHTGEKPFSCEVCDYKCRRNIELIIHSRIHTGEKPFACEVCGCSFTRRQVLKVHLSTHTGEKPFSCERCNLKFAYVQQLKIHVRTHTGEKPFTCDMCGNKYALKHGLKIHLRTHTGEKPFRCKICSYKAAQRQTLDAHMKRHIGEKNRPVKVEPSSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -