Cnig012868.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294029.1:45860794-45862152[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0005 0.026 15.8 0.6 1 23 78 100 78 100 0.97 2 13 1.6e-05 0.00083 20.5 1.2 1 23 106 128 106 128 0.99 3 13 3.2 1.7e+02 3.8 8.6 3 23 136 156 134 156 0.96 4 13 0.087 4.5 8.7 5.7 1 20 162 181 162 184 0.94 5 13 0.0013 0.069 14.5 4.3 1 23 190 212 190 212 0.97 6 13 3.3e-05 0.0017 19.5 3.0 1 23 218 240 218 240 0.99 7 13 0.001 0.053 14.8 5.3 3 23 248 268 246 268 0.97 8 13 0.0016 0.083 14.2 2.8 1 23 274 296 274 296 0.98 9 13 0.02 1 10.8 5.8 3 23 304 324 302 324 0.97 10 13 0.00046 0.024 15.9 3.1 1 23 330 352 330 352 0.98 11 13 4e-05 0.0021 19.2 2.3 1 23 358 380 358 380 0.98 12 13 0.0001 0.0054 18.0 2.7 2 23 387 408 386 408 0.97 13 13 0.0021 0.11 13.8 5.6 1 23 414 436 414 436 0.99
Sequence Information
- Coding Sequence
- ATGGAAGATACAAACTTAGCCACTTCCGTTGACATTAAAGATGTTATTGTGAGTACACAGGGAATATCTTCAGAGGAATCAAAAATTGGTATCAAAGAGATTAAAATTGAAGAGATGGGGGACACAGATATCAAGTTAGAAGACTtacatcattccattgacattaaagaagatGATTCAATTAACCGATCTCAAATCGATCAAGGTTCTAAAGCGAAAATAAGCAAACAATTTAGTTGTCGGGTATGTAacttaatttttagcaataaacTGCAACTTCGAGAGCATGCAAAAATTCATATCGACAAGAAATCCTTCGAGTGtaacatttgtgattataaatcttCTCGAAAGAGTACCATGGAGGACCATTTACGAACTCACACCGGGGAGAAACCATTTGGATGTAAAATATGTGATTTTAAGTGTTCTCGTAAGCATACTTTGAAGTGTCATTTAGTTACACATTCCGGTGAGAAACCCTTcgagtgtaacatttgcgatttTAAGTGTTCTCGTAAGCAAGTTTTGAAAAATCATTTGTTATGTCACACCGGCAAAAAACCGTATCAATGTAACATTTGTGATTTTAAGTGTTTTCAGAAGGGACATTTAAATGGTCATTTGCAAATTCATTCTGGCCGgaaaccatttgagtgtaaTATTTGCGGTTATAAGTGTACCGTAAAACGATATTTGGAGCTTCATCAACGAACGCATACTGGCAAGAAGCCGTTTGggtgtaacatttgcgattataaatgctTTCGCAAGACACATTTGGAAgatcatttacgaactcatactggcgaaaaaccgtttgttTGTAGCTTTTGTGGTTATAAGTGTTCAGCCAAACGATACTTGGAAAATCATCTAAAAATCCACACGGGCCAGAAAAGGTACGGTTGCAGCATGTGCGATTATAAGTGTTTTCAGAAGGAACACCTGAAAACTCATTTTCGAGTtcacaccggcgagaaacctTTTGAATGTAATATTTGTGAATATAAATGTTCTCTGCGGGGAAATTTTAATAGGCATTTACGGCTTCACACCGGTCAAAAGCCTTTTGAATGTAACATTTGCGGATATAAATGTTCTATAAAAGGATATTTGAAAAGGCATCTACTAACTCATAGCACCGAGAAACCGTTGGAGTGCAACGTATGCAGTTATAAGTGTTCggtaaaggaaaatttgaaacaGCATTTACGAACTCATTCCAACAAGAAAGTGTTTaagtgtaacatttgcgatttTACATGTTTTCGAGAACTGCATTTAAAAGATCACATACAAACTCATAAGGACTCGGAAATCCAAAACGGTGATGATTTATCCTGTATATCGAGGTGA
- Protein Sequence
- MEDTNLATSVDIKDVIVSTQGISSEESKIGIKEIKIEEMGDTDIKLEDLHHSIDIKEDDSINRSQIDQGSKAKISKQFSCRVCNLIFSNKLQLREHAKIHIDKKSFECNICDYKSSRKSTMEDHLRTHTGEKPFGCKICDFKCSRKHTLKCHLVTHSGEKPFECNICDFKCSRKQVLKNHLLCHTGKKPYQCNICDFKCFQKGHLNGHLQIHSGRKPFECNICGYKCTVKRYLELHQRTHTGKKPFGCNICDYKCFRKTHLEDHLRTHTGEKPFVCSFCGYKCSAKRYLENHLKIHTGQKRYGCSMCDYKCFQKEHLKTHFRVHTGEKPFECNICEYKCSLRGNFNRHLRLHTGQKPFECNICGYKCSIKGYLKRHLLTHSTEKPLECNVCSYKCSVKENLKQHLRTHSNKKVFKCNICDFTCFRELHLKDHIQTHKDSEIQNGDDLSCISR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -