Cnig013488.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- Znf131
- Assembly
- GCA_958510845.1
- Location
- OY294029.1:50394147-50408582[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.3 1.2e+02 4.3 0.0 5 19 166 180 164 180 0.95 2 15 0.0035 0.18 13.1 1.7 1 23 233 255 233 255 0.95 3 15 4.6 2.4e+02 3.3 0.7 12 23 255 266 254 266 0.91 4 15 8.8 4.6e+02 2.4 0.3 1 10 272 281 272 285 0.84 5 15 0.0046 0.24 12.8 2.4 1 23 330 352 330 352 0.97 6 15 0.0062 0.33 12.3 1.4 1 23 358 380 358 380 0.98 7 15 8.7e-05 0.0045 18.2 0.5 1 23 386 408 386 408 0.98 8 15 2.7e-06 0.00014 22.9 0.9 1 23 414 436 414 436 0.98 9 15 0.035 1.8 10.0 1.7 1 23 442 464 442 464 0.97 10 15 0.00022 0.012 16.9 0.4 1 23 470 492 470 492 0.99 11 15 0.0032 0.17 13.2 4.1 1 23 498 520 498 520 0.98 12 15 8.7e-06 0.00046 21.3 2.7 2 23 528 549 527 549 0.98 13 15 0.21 11 7.6 1.6 1 23 555 577 555 577 0.97 14 15 0.00087 0.046 15.0 1.9 1 23 583 605 583 605 0.98 15 15 3.5e-05 0.0018 19.4 6.9 1 23 611 633 611 633 0.98
Sequence Information
- Coding Sequence
- ATGGTAGAAAAGGACAAAGGTGGAAGATTGCCATTTTGGTGGAATGAGGACATCGCAGATTACATAGAACGAAAGAACGATTTATACCACAAGTGGTCTTCTCGGAGAACCACAAAATCTCTACAAGAatataagcaaattaacaaatcCGTTAAAAAAAGGAATGGGAAAGAAAAGGTTTTGAAACAGATGGAAAGgcagttgcctagtatACCTAGCGCCGGCACTTATACATTTCAAGAATGGCTTCCGTATTTGGTTTTCGACTTAGCACATGTGGGTGCTTTTCCATGTGAATTAGAAGATGGGGAATTGGAAGCGTCCGAAGCTCCATGCCAATCGAACGGTTACTCCCAAATTAAGATGGAAGAAATGGAAGTCAAGTTagaagatttgcatcattccattgacatcAAAGAAGAAACTTCAATTTTGGAAACTGAAACGGATGGAGAATGCAAACCAGAAACCAGCTCGAAAAAGTTTCTTACtgaaatttgtgactataaatatGAACAGGAAGATTCCCTAAAAATTCATGATTCAAAAGACTGCGTGCAAATTAAGGCGGAAGATATGGAATTTAAGCTGGAAGATTTGCACCATTCTATCATGATTAAAGATGAGGAACTCCCAATTGCTGTAGAACTTGAACTAGAGAGAAAATACAAACCACCACAAACAAGTCGAAAGGCTTTTTCCTGCGAACTTTGCGACTATACATGCGCAAGTAGGCGTAACGTACAAAGACATACAGAAGCTCATAAAGGATCCCTTAAGGTTCATTTAAGAAGTCATACCGGAGAAAAACCGTTTAGGTGTGAAATTTGCGATAATAAATATGCATACATAAGTCCATACGATGCGAGTGGCCAGTCCCAAATTAAGACGGAACAAGAAGAGGAAATTACAGTTAAGCAGGAATACTTGCATCATTCTTCCGATATTGAAGAAGATTCTTTAAAAAGCCAAAGCTGCAAGAAACCGTTTGTATGTGAAGTTTGCGAGAATACATTTGTACGTAAATCCCAGTTAAAATGTCATTCGAGAGtgcataccggggaaaaaccgtttgaatgtgaaatttgtgactataaatgtgcaTGGAAGAAATCTTTAAGAAATCATTTAGCCAcgcataccggcgagaaacggtttatgtgtaaaatttgtgactataaaagTGCAGTGGCTGGAAATTTGAAGCGGCATTTAAAAAGACATACGATTGAAAAGTCTTTTGTGTGTGAAGTTTGTGAAAATGCATTTTCACGTAAATCACATTTAGAAAGTCATTTAAGAGTGCATACCGGCTATAAACCGTTTGCATGTGAAACTTGTGACTACAAATGTGCATGGAAGAGTTCCCTAAGAGATCACTTAACCACCCATACCGACGAGAAACGGTTTACATGTGAAATTTGCGACTATAAAAGTGCAATGGTTGCAAATTTGAGACGGCATTTAAAAACACATAACAGCAAGGAGCCATTCGTCTGTAAtttttgtgactataaatgtatACGGAAGGAAACCTTCCAAGATCACATAAAAAATCATACTGGCGAAAAGCCATTTGTTAAATGTAAAATctgtgactataaatgtgcaAGGAAAGGAAATTTAAAGGAACATCTGAGAACTCACACCGGCGACAAACCATTTGCTTGTGACATTTGCAGTTATAAATGCGCATGGAAAAATTCGTTAAAAGAACATCTAACAACTCATGCTACTGAGAAACCATTTAAATGTGGAaattgtgactataaatgtgcactcaagaaaaatttgaaagctCATGTAGCAACTCATTTGAGTGTGAAACCGTTTTCTTGTGgaatttgtgactataaatgttcgCGAAAATATCATTTGAATCGTCATTTGAAAACTCATCAATGA
- Protein Sequence
- MVEKDKGGRLPFWWNEDIADYIERKNDLYHKWSSRRTTKSLQEYKQINKSVKKRNGKEKVLKQMERQLPSIPSAGTYTFQEWLPYLVFDLAHVGAFPCELEDGELEASEAPCQSNGYSQIKMEEMEVKLEDLHHSIDIKEETSILETETDGECKPETSSKKFLTEICDYKYEQEDSLKIHDSKDCVQIKAEDMEFKLEDLHHSIMIKDEELPIAVELELERKYKPPQTSRKAFSCELCDYTCASRRNVQRHTEAHKGSLKVHLRSHTGEKPFRCEICDNKYAYISPYDASGQSQIKTEQEEEITVKQEYLHHSSDIEEDSLKSQSCKKPFVCEVCENTFVRKSQLKCHSRVHTGEKPFECEICDYKCAWKKSLRNHLATHTGEKRFMCKICDYKSAVAGNLKRHLKRHTIEKSFVCEVCENAFSRKSHLESHLRVHTGYKPFACETCDYKCAWKSSLRDHLTTHTDEKRFTCEICDYKSAMVANLRRHLKTHNSKEPFVCNFCDYKCIRKETFQDHIKNHTGEKPFVKCKICDYKCARKGNLKEHLRTHTGDKPFACDICSYKCAWKNSLKEHLTTHATEKPFKCGNCDYKCALKKNLKAHVATHLSVKPFSCGICDYKCSRKYHLNRHLKTHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -