Cnig026846.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294033.1:30326506-30328058[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.2 1.2e+02 4.3 1.2 1 22 126 147 126 150 0.88 2 11 3.3e-05 0.0017 19.5 1.4 2 23 157 177 157 177 0.97 3 11 8.8e-05 0.0046 18.2 0.1 2 23 183 204 182 204 0.96 4 11 1.1e-05 0.00057 21.0 2.8 1 23 209 231 209 231 0.98 5 11 0.28 14 7.2 2.6 1 23 265 289 265 289 0.88 6 11 0.0097 0.51 11.7 3.3 2 23 296 316 295 316 0.97 7 11 0.00047 0.025 15.9 0.4 2 23 322 343 321 343 0.96 8 11 3.8e-05 0.002 19.3 0.8 1 23 348 370 348 370 0.98 9 11 6e-06 0.00031 21.8 0.3 2 23 379 400 378 400 0.97 10 11 4.3e-07 2.3e-05 25.4 1.0 1 23 406 428 406 428 0.98 11 11 1.5e-05 0.0008 20.6 0.3 1 23 434 457 434 457 0.97
Sequence Information
- Coding Sequence
- ATGGATCGGATGTGTCGGACGTGTTTGAAAGTTTCCAACCTCCTATTCGACTTATTTGCGGACGAATTACCGCACAAAATTGAGGTGATCTCATCGCTGCAAaTTTTACTGGACACTAGGTTTccttgtaaaatttgtgaagaTTGCTCACGCAACGTCCACCTGTTATATGATTTTCGCAACCTTATTATCGAGAGTAATGTCACTTTGCAGCGAGATTGCATCAAGTCAGAACCTGAATCGCAGAGCAAAGGAAATGAAGAGGACGTGAACTTGGAACAGAAAGTAGAGCTGGTCACATTAGATTCCTGGCTGATGGACGACGTGGAAGAAAGTAAACCCAATTCTAACCTTAAATTGAGAAAAACGAAAGTTTATCAATGTGGTCAGTGCAGTTTTTCCACCTCTGTTTACAATTTGTGGAGGAATCACAACAAGAGCAGCACGCATAAAGAGGCGGAGAAGGCGGTTTGCGAGATGTGTGGGAAGGTCGTTACGAAACATAACTTGAAGAATCACATGCGAGTCCACACGGAAGACCCGGTCTCGTGCGGATATTGTgggaaagtttttaaaaatgtgggATCTTTACGGGGGCACGTGTCGGTTCACGAGGGTCACCTCTTTCAGTGCAAAGTGTGCGGGAAAGTTTACAAAAACCGGAAAGGTTATACGAACCACAGACAAAGACATAAATCCAGCGACGTCAAGTACAAATCGGACGAAACAAGTGTAACTTCTGAAGATTCTGTAGACCGAGGAAACGAAAGTTCCGATGGGGAAAAAGTTATTTATACCTGCAAGAAATGTGATTTTACGACTTCGGCTTATAATCTGTGGCGAAATCACAAAAGGAGTAAGTCTCATATAGGAGTGGAAAAATCCGTGTGTAACGTTTGCGGGAAAATGATTAGAAAAACCCACATAACTCATCACATTCGTACTCATACCGAAGCACCGGTCATGTGCAAATTTTGCGACAAACAGTTTAAGAATGTGGGGTCTCTAAGGGGTCACCTGCTGATTCACAAGGGAATTAATTATCCTTGTACAACTTGCGggaaaatttatgaaaacagAAAAGGCTACTCGGACCACATGAGAAGGCATAAATTGGGTGACGTAAAAACTGTGGAGTGTGCATTGTGCGGAAAAATGTTTTACGATAAACAAACGCTGGTGAAACATATTAGGAGCCATACAGGCGAGCGACCGTATCCTTGTGAGTACTGCAAGAAAGGATTTTCGAGCAGTAATGCTTTGAAAACTCACATAAGAAGGCATACAAATGAGAAACCGTTTGCCTGCGAATATTGTGATATGGCTTTTCCACAGAGAGTTTCGCTCAGGAATCATGCGAGAACAAAACATGCCGATAAAGTTGTTCAAGAAAATGTCACGTAA
- Protein Sequence
- MDRMCRTCLKVSNLLFDLFADELPHKIEVISSLQILLDTRFPCKICEDCSRNVHLLYDFRNLIIESNVTLQRDCIKSEPESQSKGNEEDVNLEQKVELVTLDSWLMDDVEESKPNSNLKLRKTKVYQCGQCSFSTSVYNLWRNHNKSSTHKEAEKAVCEMCGKVVTKHNLKNHMRVHTEDPVSCGYCGKVFKNVGSLRGHVSVHEGHLFQCKVCGKVYKNRKGYTNHRQRHKSSDVKYKSDETSVTSEDSVDRGNESSDGEKVIYTCKKCDFTTSAYNLWRNHKRSKSHIGVEKSVCNVCGKMIRKTHITHHIRTHTEAPVMCKFCDKQFKNVGSLRGHLLIHKGINYPCTTCGKIYENRKGYSDHMRRHKLGDVKTVECALCGKMFYDKQTLVKHIRSHTGERPYPCEYCKKGFSSSNALKTHIRRHTNEKPFACEYCDMAFPQRVSLRNHARTKHADKVVQENVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -