Basic Information

Insect: Cantharis nigra
Gene Symbol: -
Assembly: GCA_958510845.1
Location: OY294029.1:8479533-8488501[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 9.3 4.8e+02 2.4 0.1 4 17 163 176 163 177 0.88

2 10 0.006 0.31 12.4 5.3 1 23 242 264 242 264 0.97

3 10 0.0087 0.45 11.9 0.2 2 23 275 296 274 296 0.91

4 10 7.4e-06 0.00039 21.5 2.8 1 23 302 324 302 324 0.99

5 10 0.0002 0.01 17.0 0.4 6 23 336 353 331 353 0.96

6 10 1.4e-06 7.3e-05 23.8 0.1 1 23 359 382 359 382 0.95

7 10 1.2e-05 0.00064 20.9 0.2 3 23 390 411 389 411 0.95

8 10 5.6e-06 0.00029 21.9 1.8 1 23 417 440 417 440 0.95

9 10 6.4e-06 0.00034 21.7 1.6 1 23 446 468 446 468 0.98

10 10 7.5e-05 0.0039 18.4 0.2 1 22 474 495 474 498 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	9.3	4.8e+02	2.4	0.1	4	17	163	176	163	177	0.88
2	10	0.006	0.31	12.4	5.3	1	23	242	264	242	264	0.97
3	10	0.0087	0.45	11.9	0.2	2	23	275	296	274	296	0.91
4	10	7.4e-06	0.00039	21.5	2.8	1	23	302	324	302	324	0.99
5	10	0.0002	0.01	17.0	0.4	6	23	336	353	331	353	0.96
6	10	1.4e-06	7.3e-05	23.8	0.1	1	23	359	382	359	382	0.95
7	10	1.2e-05	0.00064	20.9	0.2	3	23	390	411	389	411	0.95
8	10	5.6e-06	0.00029	21.9	1.8	1	23	417	440	417	440	0.95
9	10	6.4e-06	0.00034	21.7	1.6	1	23	446	468	446	468	0.98
10	10	7.5e-05	0.0039	18.4	0.2	1	22	474	495	474	498	0.91

Sequence Information

Coding Sequence: ATGGTTTGGTTTCCGCGCCGGTCACTCCACCACTCTTCAGCTACTGCGAATCGACGAGCAAATCACGTTATCCTTAAACAAGAAGGAAGCAACAGTCGCGATATTTCTGGACGTCTCGAAATCGTTCAACAAAGTTTGGCACGAAGGTCTTATCTACAAGATGACTCTTGTAGCGCCGCCAGGGCACTGGCAGAAAACAGCTCCATCCCCGATGAGCAGTTTGGCTTCCGTCTAGGTTACTCCACTACATTGCAAGTGCTGAGGCTAGTGGTGCAAGCAACGGGTGCAGTGTTCCTCGATGTCGCCAAGGCCTTCGATAAGGTATGGCATCAGGGACTGCTCCATGGCGGCATCGACCCAGCACTAGTCAGGCTGATGGCGTCCTACCTGTCAGAGTATAAATCTACGATTAACGAATACAGATTATTACTTCTCAGTGAATTAAAATTGGAATCAGAACCAGATACTACCATTGACTATGAAACACCGAATTGCAGTAAATCATATTACAATTCACAGAATTTATCCAATCCGAGCAATGAGGATTTGCAAAACCAAACCGAAAGTTTAGCATTTGTTCCTGATGATGACATGAATCcttgCATTCATTACGATGGTATggttttaaattgcaatttatgcatgcaaaataatacaaattacttTTGTATTGGAGCAAAAGATATAATAAAGCACTTGTGGGAAATTCACCAAGAAAAGTTGTTCATCTGTAATGTTTGTAATGAACAATTTCATCATAAGTTTGAATTGTCGAAGCATACAAAAATTCACGTACCCAGCAGCAATTCGAATAAGAAATGGGAGTGTAGTGTGTGCACAAAGAAATTTGGatcaaaaaatttgttagaaGAACATGAATATGCTCATGCCGGTGTGCAACCTTACGAGTGTGAACTTTGCAAAAAACGCTATACCTcaaaatatacattaaaaattcATCAACAAACCCACGAACCTAGAAATCGTAATTACATGTGTATTCCTTGTGGGAAGAAATTTTCTCGAAAAGCGGAATTACGCGATCACAAACGTATACACACTGGAGAACGACCCTTCATCTGCCCGACCTGCGGTGCGTCGTTTGCTCAACGCTCCAATCTACAGTCTCACATCAAAGCAACTCATTTAAATCTGAAAGATAAAATATGCGACATATGTGGGAAAGGATTTAAGCGAAAGCGGTTACTAATGTACCATATGAATGCGGCACACACCAAAGACCGACCGTTCAAATGCTCGGAATGTGGAAAAGGTTTTGTTTATCCCGAGCACCTTAAGAAGCATAAACTTAATCTCCATAAAAACGAAAAACCTTTCGAATGCAATATTTGTAACAAAACTTTTGGTAGTCGTGATAATTATAATTCTCATTTGTATACGCACGCAGATCGAAAGCAATATGAATGCTATACATGTGGAGTTGGATTTACGCGCAAACCGGCATTGAAAAAACATATGGATGTAGAGAAACACATGGGGCCTACGTATATTTTAAATCGTGCCGAAATGCAAATTTCCAGTGAAaGTAACTCAAGTAATAAAGAGGATTCTTCGGAGGTAATCATCGTGTCTGAAATTAGAGAAATGGAAGACATAACCGATGGCAATGGCCCAACTATACCGATTAATGGAATTGCGTATCAAAATTATGAATATGCAAATCAGTATTATTCAAGTGAAGAGTCAAATGAAACCTATACAATTGTACAAACTCCAGATGGAAGTCATTATATTGAGATAGAAAATGATgagattaaGGAAGATGATTATGCAAACTACATCGATCCATCATCGATAGATCCTAACGAATATggtaataatgaaataatcgACCCTACAAATATGTACagcaatcaaaataatttgaaacaaattgaaatttggagGGACAATGAAGTAAAATATGTACTCATGGAATTTGTTCCtgatcaataa
Protein Sequence: MVWFPRRSLHHSSATANRRANHVILKQEGSNSRDISGRLEIVQQSLARRSYLQDDSCSAARALAENSSIPDEQFGFRLGYSTTLQVLRLVVQATGAVFLDVAKAFDKVWHQGLLHGGIDPALVRLMASYLSEYKSTINEYRLLLLSELKLESEPDTTIDYETPNCSKSYYNSQNLSNPSNEDLQNQTESLAFVPDDDMNPCIHYDGMVLNCNLCMQNNTNYFCIGAKDIIKHLWEIHQEKLFICNVCNEQFHHKFELSKHTKIHVPSSNSNKKWECSVCTKKFGSKNLLEEHEYAHAGVQPYECELCKKRYTSKYTLKIHQQTHEPRNRNYMCIPCGKKFSRKAELRDHKRIHTGERPFICPTCGASFAQRSNLQSHIKATHLNLKDKICDICGKGFKRKRLLMYHMNAAHTKDRPFKCSECGKGFVYPEHLKKHKLNLHKNEKPFECNICNKTFGSRDNYNSHLYTHADRKQYECYTCGVGFTRKPALKKHMDVEKHMGPTYILNRAEMQISSESNSSNKEDSSEVIIVSEIREMEDITDGNGPTIPINGIAYQNYEYANQYYSSEESNETYTIVQTPDGSHYIEIENDEIKEDDYANYIDPSSIDPNEYGNNEIIDPTNMYSNQNNLKQIEIWRDNEVKYVLMEFVPDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -