Cnig013341.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294029.1:49319507-49321231[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.9 2.6e+02 3.2 0.2 13 23 63 73 61 73 0.83 2 13 6.9e-06 0.00036 21.7 2.1 1 23 79 101 79 101 0.98 3 13 0.0017 0.088 14.1 1.9 1 23 107 129 107 129 0.98 4 13 2.4e-05 0.0013 19.9 1.4 1 23 135 157 135 157 0.99 5 13 0.0018 0.096 14.0 1.9 1 23 163 185 163 185 0.98 6 13 0.0083 0.44 11.9 1.6 2 23 192 213 191 213 0.97 7 13 0.00015 0.0081 17.4 2.6 1 23 219 241 219 241 0.97 8 13 0.00019 0.01 17.1 1.7 1 23 247 269 247 269 0.98 9 13 3.1e-05 0.0016 19.6 0.7 1 23 275 297 275 297 0.99 10 13 9.7e-05 0.0051 18.0 2.2 1 23 303 325 303 325 0.99 11 13 0.0025 0.13 13.6 6.1 2 23 332 353 331 353 0.97 12 13 0.004 0.21 13.0 2.2 1 23 359 381 359 381 0.98 13 13 1.5e-05 0.00076 20.6 2.8 1 23 387 409 387 409 0.98
Sequence Information
- Coding Sequence
- ATGGATGACTTCATGCCAGCTGACACTTTCATTAAACAAGAAAGAGATGATAGCAAACATATGAAAATTGAAGATATGGAGGATGTAGATGTGAAGCTGGAATCTTTGCATCATTCCGTTGATATCAAAGAGGAGATTTCTCATTCTCAATCGAATGATCAAACTGCTACCGCTAGACAACCCCAAAAAACTGTGTTGAAAAACCATTTACGAACCCACAGCGGTGAGAAACCATTCGAATGTagcatttgcgattataaatgttctcaaaaGCCGAATCTGAAACGGCATTTATTAATTCACACCGGCGAGAAGCCATTCGAATGTACAGTTTGTGAATTCAAATGTTCACAGCAAACTGTTCTGCAAGACCACTTGCGAATCCataccggtgagaaaccatttaagtgTACAATATGCGATTACAAAGGATCGCAAAAGTCTGCTTTGAGATATCATCTACAAACtcataccggtgagaaaccatttaagtgTACAGCATGCGATTTTGAATCTTATCAAAGAGGAAAATTAAACAagcatttacgaactcataccggagaCAAGCTGTTGATGTGTTCActttgcgattttaattgtAGCCGAGAAAATGTGCTGATAAACCATTTACGAACTCACAGCGGTGAGAAACCGTTCGAATGTAGCATATGCGAATTTAAATGTTCTCAAAAGCCGAATCTGAAACGCCATTTACTACTtcacaccggcgagaaaccatttgaaTGTTcagtttgtgattataaatgttcgcaGCAAACGGTTTTGCAAGACCACTTGCGAATTCAcaccggtgagaaaccatttaagtgTACAATATGCGATTATGAAGGATCACGAAAATCTGCTTTGAGATATCATTTACTAACCCAtactggtgaaaaaccatttaagtgTACTGCCtgcgatttaaaattttaccaaagagggaaattaaacaaacatttaCAAACTCATACCGGCGACAAGCTGTTGATGTGTCCgcattgcgattttaaatgtagccaaaaaattaaatataaaaaccatTTACGGACCCATAACGGTGAGAAACCCTTCGAGTGTACTAGTTGCGATTATACTTCTTTTCGAACATATGAATGGAAAAACCATTTACGAACGCATACTGGCGACAAACCGTTCGAGTGTTCAGTTTGCGATTTTAAAACCACTCAGAAAAGTTACCTAACGAAGCATTTGAAAACTCATACTGTCGAACGCGAAGACTCAAAAGTAAGTTTGTATTCCGCATAA
- Protein Sequence
- MDDFMPADTFIKQERDDSKHMKIEDMEDVDVKLESLHHSVDIKEEISHSQSNDQTATARQPQKTVLKNHLRTHSGEKPFECSICDYKCSQKPNLKRHLLIHTGEKPFECTVCEFKCSQQTVLQDHLRIHTGEKPFKCTICDYKGSQKSALRYHLQTHTGEKPFKCTACDFESYQRGKLNKHLRTHTGDKLLMCSLCDFNCSRENVLINHLRTHSGEKPFECSICEFKCSQKPNLKRHLLLHTGEKPFECSVCDYKCSQQTVLQDHLRIHTGEKPFKCTICDYEGSRKSALRYHLLTHTGEKPFKCTACDLKFYQRGKLNKHLQTHTGDKLLMCPHCDFKCSQKIKYKNHLRTHNGEKPFECTSCDYTSFRTYEWKNHLRTHTGDKPFECSVCDFKTTQKSYLTKHLKTHTVEREDSKVSLYSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -