Cnig013171.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294029.1:47712390-47713745[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00035 0.018 16.3 1.1 2 23 90 111 89 111 0.97 2 13 8.5e-05 0.0045 18.2 4.3 2 23 118 139 117 139 0.97 3 13 0.057 3 9.3 0.4 1 23 145 167 145 167 0.97 4 13 0.00011 0.0056 17.9 2.7 1 23 173 195 173 195 0.98 5 13 0.0084 0.44 11.9 6.7 1 23 201 223 201 223 0.97 6 13 0.0011 0.059 14.7 3.3 3 23 231 251 229 251 0.98 7 13 4.5e-08 2.4e-06 28.5 1.3 1 23 257 279 257 279 0.99 8 13 7.9e-05 0.0041 18.3 3.8 1 23 285 307 285 307 0.98 9 13 0.0031 0.16 13.3 3.0 1 23 313 335 313 335 0.98 10 13 0.00058 0.03 15.6 4.0 1 23 341 363 341 363 0.97 11 13 0.00028 0.015 16.6 0.9 1 23 369 391 369 391 0.98 12 13 5e-06 0.00026 22.1 3.3 1 23 397 419 397 419 0.97 13 13 0.28 15 7.1 3.9 3 23 427 448 425 448 0.93
Sequence Information
- Coding Sequence
- atggcATTTACCCAGGAGTTAGAAAGTGCTAGTAGTGGAATTAAGATAGAACACTTCGACATCAACCTAGAAGCCGTACACTATTCTGTTGACATCAAAGATGACACTTTCATCAAGGGGGTATTTTCGGATAATGAAGTGGAAAATGGTAACAAGGATATTAAATATGAAGAGTTGGAGAATATGGATATCAAGCTCGAAGAACTACATCATTCCgttgacattaaagaagaacTGTCGTTTAACGAATCGAAACTGAATCAGTTGAAATGTGGGGTCTGTAACAAATTATTTACCAATAAATTGAAACTTACAAAGCATGCAAAAGTTCATATCGGCCAGAAATTGCTCGAATGTAATatgtgcgattataaatgttctcggTCGGGACACCTGAGAGATCATTTACGCAGTCACTCTGGAGAGAAACCCTTTGCATgtaaaatttgcgattataaatcttcTTGGAAAGGAGATCTTGATTCTCATTCACGAACTCATACAGGAGAAAAACCATTTGAGTGCCAAatatgcgattataaatgtagcAAGAAAGTTACTCTGAGAGATCATTTACGAATACATACCGGAGAGAAGCCGTTTGAGTGCAGCatgtgcgattataaatgttctcttAAAAACCATCTGAAACGGCACTTTCAAATTCACACTGGCGTGAAACCATTCGGGTGTACCATTTGTGGGCATAAATGTTCCGAAAAGGGAGATTTGAAAAACCATTTACTGACGCATACTGGCGAGAAGCCGTTCGAGTGTAGCATATGCGGTTATAGCTATACTCGAAAAGGAACTCTGACTcgtcatttacgaactcatactggtgagaaaccgtttgagtgtaataTTTGTGGTCATAAATGTTCtgaaaaaggaaatttgaaaagTCATTTACAAAGCCATACCGGAGATAAACCGTTCGAGTGTAAAATGTGCGATTACAAATGTTTACGAAGAGGACAATTGAAAGATcatttacgaattcataccAGAGACAAACCGTTCCAGTGTagcatttgcgattataaatgttctcagaAAGGACGTTTGAAACGGCATTTTCTTATTCAttccggggaaaaaccgtttgagtgtaaaatttgcaattataaaagtTCTCTAAAGGAACTCTTAAAACGGCATTTATTAATTCAttccggcgagaaaccgtttgactGTGACGTTTGCGATTATAAGTGTTCTCAAAAGGGGCAATTAAAACggcatttacgaactcatactggcgagaagccGATTATTTGCCACCtctgcgattataaatgttcagaAAGAAAACAGCTAAACGGCCATTTTTTACGAAATCATACATCCGAATAA
- Protein Sequence
- MAFTQELESASSGIKIEHFDINLEAVHYSVDIKDDTFIKGVFSDNEVENGNKDIKYEELENMDIKLEELHHSVDIKEELSFNESKLNQLKCGVCNKLFTNKLKLTKHAKVHIGQKLLECNMCDYKCSRSGHLRDHLRSHSGEKPFACKICDYKSSWKGDLDSHSRTHTGEKPFECQICDYKCSKKVTLRDHLRIHTGEKPFECSMCDYKCSLKNHLKRHFQIHTGVKPFGCTICGHKCSEKGDLKNHLLTHTGEKPFECSICGYSYTRKGTLTRHLRTHTGEKPFECNICGHKCSEKGNLKSHLQSHTGDKPFECKMCDYKCLRRGQLKDHLRIHTRDKPFQCSICDYKCSQKGRLKRHFLIHSGEKPFECKICNYKSSLKELLKRHLLIHSGEKPFDCDVCDYKCSQKGQLKRHLRTHTGEKPIICHLCDYKCSERKQLNGHFLRNHTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -