Cnig001800.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- ZFX
- Assembly
- GCA_958510845.1
- Location
- OY294028.1:20824432-20826199[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0023 0.12 13.7 1.7 1 22 228 249 228 249 0.96 2 11 0.00029 0.015 16.5 7.8 2 23 259 280 251 280 0.93 3 11 7.6e-05 0.004 18.4 0.6 1 23 286 308 286 308 0.98 4 11 0.00012 0.0063 17.7 0.9 1 23 314 336 314 336 0.95 5 11 7.7e-05 0.004 18.3 1.1 1 23 342 364 342 364 0.98 6 11 1 53 5.4 8.0 2 23 372 393 371 394 0.95 7 11 1.2e-05 0.00062 20.9 0.3 3 23 412 432 410 432 0.97 8 11 1.3e-05 0.00066 20.8 1.7 1 23 438 460 438 460 0.96 9 11 1.1e-05 0.00057 21.0 5.3 1 23 466 488 466 488 0.98 10 11 4.6e-06 0.00024 22.2 1.2 1 23 494 516 494 516 0.99 11 11 3.7e-05 0.0019 19.3 1.5 1 23 522 544 522 544 0.98
Sequence Information
- Coding Sequence
- ATGGAAGAATTGCGAATTTCTAACACAAATTTTGAAGCTATTAGATTAAATAAAAGTAACTTAAGTAGATCTTGTCGTTTGTGTTTGACAGAAAATAATGTACAGCctttgtttaaattatgtttCGATGGCTTATTAATGTCCCATATTTTTAACGAGTTGACTTTTTTGAagattAGAGAGGGTGACAATTTACCTCAACGAATATGTATTAAGTGTATCGAAAAGTTAATAACGAGTTATGAATTTATTCGTAAGTGTCAAAAAATTGATGAGATATTGCATGCATTTCTAGATGACAAACAAGAAAAGACTGATTGCAAAAATGAGAATCCTACAGTTTGTCAATATTACACTCCACAAGAAAATTTGacagaaaatcataaaattgtCGAGGATGCCACAGGCAATTGCAAAAATCCAGAAGTGGCAAATTCAGACGAAAACGCAACAGAAAATTGTCGGGTTGAAATTAACAAAGAGGTTAACAATACTTTAGTTAAGAGTGAAATTTTAACGGAAGAATATGATAATAGTGAAGAACAAGTTGAAAGTAATAACGTAATCATCGAGTTGTGCCAAGAAGTAGAAGAAAATGATCTACAAAGCAGCAACAttgaagaaaattcaaaatttgaaaaagttgacTTAAATTTACCAGACCTTGTTGAACCTTCTTTGTTTAAGTGTTCCATATGCGAAAATTGTTATGACTCTTTGGaagatttaaataaacataGAAGGAGTAGTTACAAATGTAAACCATTTAAATGTTGCTGTAAGATCtgtggtaaaaaatttaaaactaattggAAGCTTAAAGTACACGAGAGAGTTCATACAGACGAGAAACCTTACGAATGTGATGTGTGTAATAAAAGATTTAATGTAATTCAAAACTTGGATCGACACAAAAGGATTCATACcggagaaaaaccatttttgtgtgaaatttgtgGCAAACgttttacGCGTTTACTAACCAAAAACGAACACATGAGAATTCATTCAGGGGATAAACCGTACAACTGTAAAATTTGCAAAGTAGATTTTTATCGTTTAGGGGAATTTAAAGTTCACATGAGGAGTCACGAATGTAGTGATAACACATTGAAGTGCCcgcattgttgtaaaatttatgttacACCGAAAATGTTTCATTTGCATATAAAGAGTCATCACTCTTTGAACAAACCAAAGCAAGCGAGAGGGGGGTCGAATAAGTGTTTATTGTGTAGCTTATGTGGTAAAACGTTTGCGACcacaggaaatttaaaaatccatttgTCTATGCACTCTGGTAGTATGCAGTATGCTTGTGAAATCTGCAATAAAAGATTTTGTTACAAAAGCAGTTTAGTGAAACACGCTTTAATTCACACTGGAGAACGACCATACTGTTGTACTTATTGTAAAAAAGCTTTTGTTCAAAGTGTTCACTTAAGGCAACATCTCCGAGTGCATACAGGTGAAAAACCGTATACCTGCGACGTTTGTGGCAAAAGCTTTGCTTTAAGTTGCAATTTAATTGTTCATAAGCGTATGCATACTGGTGAGACCCCATACAAATGTGCGTTTTGTGATAAAGGATTTTATGACTCGAGTTCCatgaaaaaacatgaaaaagttCATCGATTTGTTAAGTCGGATTAG
- Protein Sequence
- MEELRISNTNFEAIRLNKSNLSRSCRLCLTENNVQPLFKLCFDGLLMSHIFNELTFLKIREGDNLPQRICIKCIEKLITSYEFIRKCQKIDEILHAFLDDKQEKTDCKNENPTVCQYYTPQENLTENHKIVEDATGNCKNPEVANSDENATENCRVEINKEVNNTLVKSEILTEEYDNSEEQVESNNVIIELCQEVEENDLQSSNIEENSKFEKVDLNLPDLVEPSLFKCSICENCYDSLEDLNKHRRSSYKCKPFKCCCKICGKKFKTNWKLKVHERVHTDEKPYECDVCNKRFNVIQNLDRHKRIHTGEKPFLCEICGKRFTRLLTKNEHMRIHSGDKPYNCKICKVDFYRLGEFKVHMRSHECSDNTLKCPHCCKIYVTPKMFHLHIKSHHSLNKPKQARGGSNKCLLCSLCGKTFATTGNLKIHLSMHSGSMQYACEICNKRFCYKSSLVKHALIHTGERPYCCTYCKKAFVQSVHLRQHLRVHTGEKPYTCDVCGKSFALSCNLIVHKRMHTGETPYKCAFCDKGFYDSSSMKKHEKVHRFVKSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00268906;
- 90% Identity
- iTF_00268906;
- 80% Identity
- -