Basic Information

Insect: Cantharis nigra
Gene Symbol: -
Assembly: GCA_958510845.1
Location: OY294032.1:3577643-3580070[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 8.9e-05 0.0046 18.2 0.9 1 23 165 187 165 187 0.97

2 12 0.00016 0.0085 17.3 2.9 1 23 195 217 195 217 0.99

3 12 0.0004 0.021 16.1 0.7 2 23 225 246 224 246 0.97

4 12 6.6e-06 0.00034 21.7 0.9 1 23 252 274 252 274 0.95

5 12 0.0043 0.23 12.8 1.6 1 23 281 303 281 303 0.98

6 12 0.00053 0.028 15.7 1.1 1 23 309 331 309 331 0.96

7 12 6.4e-05 0.0034 18.6 0.2 1 23 337 359 337 359 0.98

8 12 2.4e-07 1.3e-05 26.2 0.5 1 23 365 388 365 388 0.96

9 12 0.00049 0.026 15.8 1.3 1 23 394 417 394 417 0.95

10 12 6.3e-06 0.00033 21.8 2.4 1 23 423 445 423 445 0.99

11 12 0.0034 0.18 13.2 3.5 1 23 451 473 451 473 0.97

12 12 0.093 4.8 8.7 0.5 1 21 479 499 479 503 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	8.9e-05	0.0046	18.2	0.9	1	23	165	187	165	187	0.97
2	12	0.00016	0.0085	17.3	2.9	1	23	195	217	195	217	0.99
3	12	0.0004	0.021	16.1	0.7	2	23	225	246	224	246	0.97
4	12	6.6e-06	0.00034	21.7	0.9	1	23	252	274	252	274	0.95
5	12	0.0043	0.23	12.8	1.6	1	23	281	303	281	303	0.98
6	12	0.00053	0.028	15.7	1.1	1	23	309	331	309	331	0.96
7	12	6.4e-05	0.0034	18.6	0.2	1	23	337	359	337	359	0.98
8	12	2.4e-07	1.3e-05	26.2	0.5	1	23	365	388	365	388	0.96
9	12	0.00049	0.026	15.8	1.3	1	23	394	417	394	417	0.95
10	12	6.3e-06	0.00033	21.8	2.4	1	23	423	445	423	445	0.99
11	12	0.0034	0.18	13.2	3.5	1	23	451	473	451	473	0.97
12	12	0.093	4.8	8.7	0.5	1	21	479	499	479	503	0.92

Sequence Information

Coding Sequence: ATGTCccaagaaaattttgataacgAACTTAATTATGCTAGTTACTGCATAGTAACTAAAGTGACAAATGAGcAAGGCGAAATTCAATATGCTACCTCGGGAGAAGAAGGCCTGGAATTGCACGTGGGAGAAATCCAAGGTGCAGAGGGTTATCAGAATTTTCACGATAATACTGTCAATTATTTCGAATCTCTTTTGCCTGGTTCGTATTCGGTATTACCACAAGAAGACGGCTATATTTTACAGGAAACCGAAAACGTGAAAAATAGTTTAGCAGAAGCAGAAGCAAATGTTAAACATGAAGAGGACTTTGAATTGGGCCTTAAATCTAACATTATTATTGGAGGTAGCATTACGGAGGAAATTACTATGCCTCTTGTGAGTCACAAAGATGGGGTATTTACCTGTTTATTGTGCGATAACGGAAATACCGTGTGCGGGGAAGCAAAAGCAATAATTGCGCATGTGCGCGAAAAGCACGGCCTACGTCTGTATATTTGCGATGTTTGCGGGGAACATTTTTGTAAACGTCCGGAACTATCGGCTCACATGAATGCGCATATAGCAACCGATGAAGGCGAATTTCAATGCGAAGTGTGTCATcgaatattttccaatttaagaTTGTTTCGAATACACAAGCGTGTGCATAATCCACAAAATAAGGCTTGGGTTTGTACCGTATGCAAAAAGAAGTATGGTTCGAAGAAATTGTTGGAAGAACATTACAACACTCACATTGGCGTGCGTCCTTATCTGTGCAAAACCTGTGGGAAAGGTTTTACATCAAAGTACACTTTGAAGGCTCACGAGAATATACACTTGGATAGAACGCGTCCTTTCAAATGCCCTCAATGCGACAACTTTTTCCTAAGtcgacaaaatttaaatcaacacTCGAGAGTTCATCTTGGTCTTAAAGAATTTTCATGCCGAGTGTGCTCTAAGCAATTTTCTACGGCCCATAGTTTAGAAGTTCACTCGATTGTTCACACGGGTTTAAAACCATATGCTTGTGTTGTTTGCAATAAAACATTTGCACGAAAGGCTGAAATACGGGATCACGAACGTACACATACCGGAGAACGTCCATATCAGTGCGAAATCTGCGGTGCCTCTTTCAGTCAACGTTCCAACTTACAGTCTCACAAAAGGGCCACACATTTTGATGACAAACGTTACAAATGTAATATGTGCGACAAAGGATATAAAAGAAGGCGGTTGCTGGATTATCACACAAAAGCGGCTCATACAGGCGAACGACCCTATAAATGCGAAGAATGTGGCGCAACTTTTGTGTATCCTGAACACTTCAAGAAACACAAGAATACCCACACGGGAGTAAAACCGTTTTCGTGTGTTGTCTGCCACAAAAAATTCAATAGTAGAGACAACAGAAATTCGCATCTTTACATCCATTCCGAGAAGAAACCTTACGAATGTGTTAAATGTGAAAGTGGATTTATGCGCAAACCACAGCTATTCCTACACATGACTGAAAGAAGTCACTGGAGTGATACCATTGCTATAAATCAACTGCAATTCAATACCGCCAGGTATTCAATTGACGGAGTTCAAGAATTTACTATTATAAGGACTCTGCAAAGGATTGCAAAGACCGAGAAAGATTCCAAACTTTCTACTTCAAAACACAGGATTTCTGAAGGAAACGAGATGTTTATAGATGATAAGAATGTTATTACCTTACATCAAGATCAAATTCTAAATATCAATGGCAATCAACTCATGTCTAATGTGCAGCAGATCGAGTATGTTGAAGAAGGTGGAGGAGTGGAAGATGGCTATATCTTGCAAAGCACTGAAGgttttgttgaaaatataaCCAGTGAAACATTGGAGGATGGTAGTAGCGGTCAACCTTACTATTTCGAAGTGCAACTTCCGACTGAAGCGTGGATGCAGGTTATGCCTCCTCAATAA
Protein Sequence: MSQENFDNELNYASYCIVTKVTNEQGEIQYATSGEEGLELHVGEIQGAEGYQNFHDNTVNYFESLLPGSYSVLPQEDGYILQETENVKNSLAEAEANVKHEEDFELGLKSNIIIGGSITEEITMPLVSHKDGVFTCLLCDNGNTVCGEAKAIIAHVREKHGLRLYICDVCGEHFCKRPELSAHMNAHIATDEGEFQCEVCHRIFSNLRLFRIHKRVHNPQNKAWVCTVCKKKYGSKKLLEEHYNTHIGVRPYLCKTCGKGFTSKYTLKAHENIHLDRTRPFKCPQCDNFFLSRQNLNQHSRVHLGLKEFSCRVCSKQFSTAHSLEVHSIVHTGLKPYACVVCNKTFARKAEIRDHERTHTGERPYQCEICGASFSQRSNLQSHKRATHFDDKRYKCNMCDKGYKRRRLLDYHTKAAHTGERPYKCEECGATFVYPEHFKKHKNTHTGVKPFSCVVCHKKFNSRDNRNSHLYIHSEKKPYECVKCESGFMRKPQLFLHMTERSHWSDTIAINQLQFNTARYSIDGVQEFTIIRTLQRIAKTEKDSKLSTSKHRISEGNEMFIDDKNVITLHQDQILNINGNQLMSNVQQIEYVEEGGGVEDGYILQSTEGFVENITSETLEDGSSGQPYYFEVQLPTEAWMQVMPPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00268918;
90% Identity: -
80% Identity: -