Cnig023096.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis nigra
Gene Symbol
-
Assembly
GCA_958510845.1
Location
OY294032.1:24077373-24083726[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.3e-05 0.00066 20.8 0.1 2 23 21 42 20 42 0.97
2 16 0.00083 0.043 15.1 1.3 3 23 63 83 61 83 0.98
3 16 0.00037 0.019 16.2 0.3 1 23 89 111 89 111 0.97
4 16 0.053 2.8 9.4 1.2 1 23 117 139 117 139 0.97
5 16 0.065 3.4 9.1 3.4 1 23 145 167 145 167 0.98
6 16 0.011 0.58 11.6 1.3 1 23 173 195 173 195 0.97
7 16 1.8e-05 0.00097 20.3 2.7 1 23 201 223 201 223 0.97
8 16 0.00084 0.044 15.1 3.2 1 23 229 251 229 251 0.99
9 16 0.00022 0.011 16.9 0.4 1 23 257 279 257 279 0.98
10 16 0.00035 0.018 16.3 2.9 3 23 308 328 306 328 0.97
11 16 0.18 9.6 7.7 3.0 1 23 334 356 334 356 0.96
12 16 0.00035 0.018 16.3 0.9 1 20 362 381 362 384 0.94
13 16 0.00014 0.0075 17.5 5.7 1 23 390 412 390 412 0.98
14 16 0.0011 0.055 14.8 5.1 1 23 418 440 418 440 0.98
15 16 0.02 1 10.7 7.4 1 23 446 468 446 468 0.97
16 16 4.7e-05 0.0024 19.0 0.6 3 23 476 496 474 496 0.98

Sequence Information

Coding Sequence
ATGCTGTCCCACATTGAACAATGCGATATTAAAATAGAAGCCTGCCCACAGAATATCACAGAATGTGATATTTGTTCACTTGGTTTTAAAAATCCAAGTGATTTAACAGCTCACATGCAAATTCACTCCGAAGAGGTGGTGGTTGAGAGTGACGTGAAAATTCAaactggtgaaaaaccatttggCTGTGATATTTGTTACTCGAGGTTTTCGTCagctaaaaatttcaaaaaacacttacgaattcataccggggaaaaaccgttcacCTGTGAAGTTTGTCAAGCAAAATTCACAGAGAGAGGAAGTTTGAAAACCCATATGGTAATTCATACTGGAATAAGACAATATGTTTGTAAAATTTGCTCCTCCACATTTTTACGTAACAACGAACTCCAATACCATATCTTTTCACATACTGGCGTAAAACCACACAAGTGCAACTTATGTCCATCAACATTTTTACGTAAAAGTACTCTGGATAGGCACCGTTTAAGCCACACCGGAGAGAGAAACTTTTGTTGTGACATTTGCTCGGCTAAATTTTTACGTAAAGCTTCTCTAGAAATTCACATGTTGCGGCACATCGGAACACGTTctttcttttgtaaaatttgccCGCTGAAATTTTACCGGAAAAACGATTTGAACACCCACATGAAGACGCACATTGtcgaaaaaacttttaaatgtgAAGTTTGCTCAGAAACATACACAAGTAAAAGGAGATTCAAAAGTCACGTCCGGACCCACACACCTGAAAAAAACTTCAATTGTGAAATTTGTCCTTCCACTTTCGCACttgaaagttatttaaaaagaCATTTACAAACCCATTGTGATATAAAACCGTTTAATTGCAACATTTGTCTCTATGATTGTATCCACTTGAAAATTCCAAGTGAAACAAAACCGTTCGGTTGCGAAACTTGCCCTTCATCTTTTTCAACTAAAAATCACTTGCGTCGACATCAACTTAGTCACAATGGTGAAAAATCGTTTTGTTGTGATATCTGTGGATCGTTGTTTCTACACAAGTCTTATTTGAAAGATCACATGGTTATCCATACGGGAGAAAAACGATTTACATGTGGACACTGTAACGCCAAGTTTGCACGAAAAAGCGACTTACGAACCCACGTTCCGATTCATCTTGGTCTAAGACCTTTCCGTTGTGAGCTTTGTCAAGCCACGTTCTGTcacaaaaagaatttaaaacaaCACATGCTAGTTCATACTGGAGTGAAAGCATTCAGTTGTGAAATTTGCCGTACTAAATTTTCACTCAAGTGCACTTTGAAAAAACACATGCTGACTCATACAGGTGAGAAGCCTTTCAGTTGTAAAATGTGCGATTTTAAGTGTTCTCAGAGGACTTCTCTGAGAAAACATCATTTAATCCATTCTGGTGAAAAACAATTTGGTTGTAAAATTTGTCAAACAAAATTTGCTCAAAAATCTGGTTTGAAAAGCCACATGTTAGTTCATTCCAAACGCTGTAATCATCAACGCAGCAAAGAAAACATGTCGGCCAATCAGAAAACTAAAGTGGATCAAGATGATGTTACTGATAAgaaGACGTTCCTGCAAGTGTACAAAAAATGGGATAGAAGAATTGCACCTGCTTTTGGATTACTAGCTTTTTTCACTTTAATTGGAATTGTTATATACAACATTATTTATGCCGAATCTACGAGCTGTAACactgaagaaaataatacaCGTATGTTCAGCGAGAATTTTGAGTCAAAGTGTTTTGAATTCAATTGTATTGTAAATTGCACTAATATTGACGAAGACGGCAATATTGTACGCCACATTAATGATGCGATGCGCAATAACgCTGAGAAATGTGTAAGCATAGAGGATTTAAAACTTTACCAGTgcaattttcaaagtaaaacgTTAAAAAATGGATGGCTACAAAATCTTTCGCATGATGTTATACGATTAACCATTTATGGAGGTAATCTGGAAGACATTGAAGAGAATGCGTTGACTAGTGATCCACCATTCTATTATCTCTACCTGTTATATCTAATTGAGTTGAATATGCGAACTTTGAAACAGAAATACTTTCTTGGAATGAAAACCCTGCAATATTTTGAGTTTCGTTTGAACACACTGAGAGAGCTGCGCGTTGAAGAGAACGCTTTGGAGGGACTTCAATCCTTGAAGTCGATTTCATATTCGCAAGTCATACTGGACGATGACGCATTGAGCAATTCATTTGGCTGCACAGGAGCCATGTTAACCAAACTTGAAATATTGGCTTTAGAGTATGGGAGTATAGACAGATTAACCGATTGTTCTTTTACTAATATTCCTCATATCAAATCTATCTATCTCAggaatgttaatttaaaatctatcgataaaaatgcatttgaaaGTAATCCGGATATACATTTACTAGATTTAAGAGAAAATAAACTAAGAACCTTGGAAAACGGCacctttaataaaataaatagagaAGCAGGTGCAGTTGATGTATATTTGGGGAGAAATAAGTGGTATTGCAATTGCTCGTTGCAATGGTTGAAAGAAGATATTTTACGGATGGAATCTTATATTAATTCAACCTCGATGCCTTTGTGCAACGATTCTATCGAATTTATAGACGTCGAGTTCTGTTCAAATCCTACACCTCCTACACCACCcatgcaattaaaaattgattgttCGGTTCATGATGGGTCACCAATTTCCATACGCGAAGAAGTTATTGTTATTCATTCTGTAAGCATTAAAATAGCTCAGGATTGTGTACATTTGGAGTTCCGAGAATTCAGCACAGATCCGCTTCAGGTACAACTTTTCACCAATGTATCattggaaaattattatttggtttGGTTTGATTCAAACAACAAAGACGATTATGGATGCGAAACACCGATACAcaattcaacaattttaaaaaatttgaaacaagaCACCACTTACACTTTCAGCGTGATAAAACCATGCGATGAAGAGGTATCTCCATTATGCACGTTTGGATTAAAAACCACCCCCGAATGGAATAAAAGGACTTGGATATCCAATAAATATCGGACAATCATAATTGCAGCCGTTAGTTCTtctattgttgtaataatcacTCTGGCCATATTAGGCACATTTTTCTTCATCCGAAATTTCCCTGCGGTAATTTCTGGAAACAAAAATGTGATCGTggttaaaccaaaaaaaatcaGTGAGGATTTGGAACCTTCGAAAGATTTTGAAAAGCCCGTGTACTTTGATCCATACCTCAAATCGATTAGTCACGGTTACCTCACTCCGAAATTTCACAAATATGACAGAGTCAAATACAGGCCATCTTTAAGGAGAAGTTTTTCGGAATGGAGTTTGGCGAATACCTCGACTGCCTACGATGATCCAAAACAAATTTACGACATGAGGATTTCTCATTCGAGATTGCAAGAACGAAACGCACAATTGAGAAATCGTTTCAACGATTTTCGACCCCCCCTGCCACCTCCTAATGGTAGAAATCGGGTACCTCTTGAAACGGATTTTGATGAGGAGAGTTTGTACAATTcagtgtaa
Protein Sequence
MLSHIEQCDIKIEACPQNITECDICSLGFKNPSDLTAHMQIHSEEVVVESDVKIQTGEKPFGCDICYSRFSSAKNFKKHLRIHTGEKPFTCEVCQAKFTERGSLKTHMVIHTGIRQYVCKICSSTFLRNNELQYHIFSHTGVKPHKCNLCPSTFLRKSTLDRHRLSHTGERNFCCDICSAKFLRKASLEIHMLRHIGTRSFFCKICPLKFYRKNDLNTHMKTHIVEKTFKCEVCSETYTSKRRFKSHVRTHTPEKNFNCEICPSTFALESYLKRHLQTHCDIKPFNCNICLYDCIHLKIPSETKPFGCETCPSSFSTKNHLRRHQLSHNGEKSFCCDICGSLFLHKSYLKDHMVIHTGEKRFTCGHCNAKFARKSDLRTHVPIHLGLRPFRCELCQATFCHKKNLKQHMLVHTGVKAFSCEICRTKFSLKCTLKKHMLTHTGEKPFSCKMCDFKCSQRTSLRKHHLIHSGEKQFGCKICQTKFAQKSGLKSHMLVHSKRCNHQRSKENMSANQKTKVDQDDVTDKKTFLQVYKKWDRRIAPAFGLLAFFTLIGIVIYNIIYAESTSCNTEENNTRMFSENFESKCFEFNCIVNCTNIDEDGNIVRHINDAMRNNAEKCVSIEDLKLYQCNFQSKTLKNGWLQNLSHDVIRLTIYGGNLEDIEENALTSDPPFYYLYLLYLIELNMRTLKQKYFLGMKTLQYFEFRLNTLRELRVEENALEGLQSLKSISYSQVILDDDALSNSFGCTGAMLTKLEILALEYGSIDRLTDCSFTNIPHIKSIYLRNVNLKSIDKNAFESNPDIHLLDLRENKLRTLENGTFNKINREAGAVDVYLGRNKWYCNCSLQWLKEDILRMESYINSTSMPLCNDSIEFIDVEFCSNPTPPTPPMQLKIDCSVHDGSPISIREEVIVIHSVSIKIAQDCVHLEFREFSTDPLQVQLFTNVSLENYYLVWFDSNNKDDYGCETPIHNSTILKNLKQDTTYTFSVIKPCDEEVSPLCTFGLKTTPEWNKRTWISNKYRTIIIAAVSSSIVVIITLAILGTFFFIRNFPAVISGNKNVIVVKPKKISEDLEPSKDFEKPVYFDPYLKSISHGYLTPKFHKYDRVKYRPSLRRSFSEWSLANTSTAYDDPKQIYDMRISHSRLQERNAQLRNRFNDFRPPLPPPNGRNRVPLETDFDEESLYNSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-