Basic Information

Insect: Cantharis nigra
Gene Symbol: -
Assembly: GCA_958510845.1
Location: OY294029.1:47598448-47599965[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0017 0.089 14.1 0.5 3 23 85 105 83 105 0.98

2 15 0.0041 0.22 12.9 1.5 1 23 111 133 111 133 0.95

3 15 0.00015 0.0079 17.4 1.2 1 23 139 161 139 161 0.97

4 15 0.18 9.2 7.8 2.9 1 23 167 189 167 189 0.97

5 15 0.0007 0.037 15.3 4.1 1 23 195 217 195 217 0.97

6 15 9.3e-05 0.0049 18.1 0.1 1 23 223 245 223 245 0.97

7 15 0.0016 0.083 14.2 4.4 1 23 251 273 251 273 0.98

8 15 4.9e-05 0.0026 19.0 0.3 1 23 279 301 279 301 0.98

9 15 0.0049 0.26 12.7 3.0 3 23 309 329 307 329 0.98

10 15 0.00012 0.0065 17.7 1.9 1 23 335 357 335 357 0.98

11 15 7.8e-05 0.0041 18.3 0.1 1 23 363 385 363 385 0.98

12 15 0.017 0.88 11.0 3.4 1 23 391 413 391 413 0.97

13 15 0.00077 0.04 15.2 0.7 1 23 419 441 419 441 0.96

14 15 0.00037 0.019 16.2 2.6 3 23 449 469 447 469 0.97

15 15 0.0002 0.01 17.1 3.6 1 23 475 497 475 497 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0017	0.089	14.1	0.5	3	23	85	105	83	105	0.98
2	15	0.0041	0.22	12.9	1.5	1	23	111	133	111	133	0.95
3	15	0.00015	0.0079	17.4	1.2	1	23	139	161	139	161	0.97
4	15	0.18	9.2	7.8	2.9	1	23	167	189	167	189	0.97
5	15	0.0007	0.037	15.3	4.1	1	23	195	217	195	217	0.97
6	15	9.3e-05	0.0049	18.1	0.1	1	23	223	245	223	245	0.97
7	15	0.0016	0.083	14.2	4.4	1	23	251	273	251	273	0.98
8	15	4.9e-05	0.0026	19.0	0.3	1	23	279	301	279	301	0.98
9	15	0.0049	0.26	12.7	3.0	3	23	309	329	307	329	0.98
10	15	0.00012	0.0065	17.7	1.9	1	23	335	357	335	357	0.98
11	15	7.8e-05	0.0041	18.3	0.1	1	23	363	385	363	385	0.98
12	15	0.017	0.88	11.0	3.4	1	23	391	413	391	413	0.97
13	15	0.00077	0.04	15.2	0.7	1	23	419	441	419	441	0.96
14	15	0.00037	0.019	16.2	2.6	3	23	449	469	447	469	0.97
15	15	0.0002	0.01	17.1	3.6	1	23	475	497	475	497	0.98

Sequence Information

Coding Sequence: ATGGATCATgactttttacaaatgccatgCAATTCAAGCAATCTGGTTGAAATTAAAACCGAAAAAGTGGAAGATGTCAAAATAAAGTTGGAAGACTTACATCATGCGattgatattaaagaagaaaCTTCTATTCTCGCAGCCGAAGTAGATAGAAAATATAGTCAAATATACCAACAGTTTGAATACGGGGTATGTAAAATCGAATTTACTACTACACCCGAACCCAAAACAcaggaaaaattatttggatGTGAAGTTTGTGGCTTTAAATCTTCACGTAAGGGAACTTTAAAAGTTCATTCGAGGATTCATACGGGCGAAAAACCTTTTGCATGCGGAATTTGCGACCATAAATCTTTAACGAAACAGAATTTGAAAGAGCATATAAGAACCCATACCGGAGAGAAACCCTTTGCTTGTGGACTTTGTGACTATCGGAGTTCCACAAAGAGGAATTACCAAATTCATCTGAGAACTCACTCTGGGGAGAAACCCTTTGCATGCCAACTTTGTGACTACAAATGTTTAACGAAAGACCGACTAAGATTGCATTTGATGACTCATACCAGGGAGAAACCGTTTGCCTGTGaattttgtgactataaatgtgcaACCAAAAAGCATCTCAAGGTGCATTTAATGGTGCATACTGGCGAACGACCCTTCGCTTGCGAATTTTGTGGTCTGCGATTTGCCCAAACGGGAGATCTCAAAGTTCACTTAATGGTCCacacgggggaaaaaccgtacgCATGTGATATTTGCGACtttaaatgtaaaacaaaaagGTATTTGAAATATCACGGCAGAACTCATACCGGAGAGAAGCCTTTCCCTTGTGACCTATGCGATTCAAAATTTGCGCGAAaggaatatttaaaagttcacCAAATGATTCacacgggggaaaaaccgtttggctgtaaaatttgcaattacaaATGCGCTACGAAACAACGTTTGAAAGTGCATTTGATGACTCATACCAGTGAGAAACTTTTCTCCTGTGAAATTTGCGACTATAAAGGCTCAACAAAAAGTTGTTTGAATATACATTTGATGACTCATACCGGAAACAAACCCTTTGTTTGTAAAATCTGTGATTCGAAATTTGCCCAAACAGGAGATTTGAAGGTTCATTTGATGattcatacgggcgagaaacccTTCGCTTGCGaattttgcgattataaatgtagaGCGAGAAAGTATCTGAAAGGTCATATAAAGACCCATTCCGGGGAGAAACCCTTTGCCTGTGAACTTTGTGACTCGAAATATACCAGAAAAGGAGATTTGAAAACTCACTTCATgattcataccggcgaaaaaccctTTGGATGTAATGTctgtgactataaatgttcaAGAAAACAAGATTTGAAAAAGCATTTAATGGCTCATACGGGGACAAAACCGTTTTCCTGTGAAatatgcgattataaatgtacaGCACAAAAGTATTTGAAGGATCATATGAAAACTCATAGCGAGACAAAAACCGAATGCCTGTGA
Protein Sequence: MDHDFLQMPCNSSNLVEIKTEKVEDVKIKLEDLHHAIDIKEETSILAAEVDRKYSQIYQQFEYGVCKIEFTTTPEPKTQEKLFGCEVCGFKSSRKGTLKVHSRIHTGEKPFACGICDHKSLTKQNLKEHIRTHTGEKPFACGLCDYRSSTKRNYQIHLRTHSGEKPFACQLCDYKCLTKDRLRLHLMTHTREKPFACEFCDYKCATKKHLKVHLMVHTGERPFACEFCGLRFAQTGDLKVHLMVHTGEKPYACDICDFKCKTKRYLKYHGRTHTGEKPFPCDLCDSKFARKEYLKVHQMIHTGEKPFGCKICNYKCATKQRLKVHLMTHTSEKLFSCEICDYKGSTKSCLNIHLMTHTGNKPFVCKICDSKFAQTGDLKVHLMIHTGEKPFACEFCDYKCRARKYLKGHIKTHSGEKPFACELCDSKYTRKGDLKTHFMIHTGEKPFGCNVCDYKCSRKQDLKKHLMAHTGTKPFSCEICDYKCTAQKYLKDHMKTHSETKTECL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00268877;
90% Identity: iTF_00268877;
80% Identity: -