Basic Information

Insect: Cantharis nigra
Gene Symbol: -
Assembly: GCA_958510845.1
Location: OY294029.1:50992651-50999099[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.6e-06 0.00019 22.5 1.4 1 23 109 131 109 131 0.97

2 12 8e-06 0.00042 21.4 2.5 1 23 137 159 137 159 0.97

3 12 7.8e-06 0.00041 21.5 1.2 1 23 165 187 165 187 0.97

4 12 2.2e-05 0.0011 20.1 0.2 2 23 297 318 296 318 0.97

5 12 0.049 2.6 9.5 2.5 1 23 324 346 324 346 0.98

6 12 0.00058 0.03 15.6 2.1 1 23 352 374 352 374 0.96

7 12 5e-05 0.0026 18.9 2.9 1 23 380 402 380 402 0.99

8 12 6.8e-05 0.0036 18.5 5.6 1 23 408 430 408 430 0.98

9 12 2e-05 0.0011 20.2 0.4 1 23 436 459 436 459 0.96

10 12 0.00025 0.013 16.8 1.7 1 23 465 487 465 487 0.98

11 12 8.6e-05 0.0045 18.2 2.4 1 23 493 516 493 516 0.97

12 12 0.0011 0.057 14.7 3.5 1 23 522 544 522 544 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.6e-06	0.00019	22.5	1.4	1	23	109	131	109	131	0.97
2	12	8e-06	0.00042	21.4	2.5	1	23	137	159	137	159	0.97
3	12	7.8e-06	0.00041	21.5	1.2	1	23	165	187	165	187	0.97
4	12	2.2e-05	0.0011	20.1	0.2	2	23	297	318	296	318	0.97
5	12	0.049	2.6	9.5	2.5	1	23	324	346	324	346	0.98
6	12	0.00058	0.03	15.6	2.1	1	23	352	374	352	374	0.96
7	12	5e-05	0.0026	18.9	2.9	1	23	380	402	380	402	0.99
8	12	6.8e-05	0.0036	18.5	5.6	1	23	408	430	408	430	0.98
9	12	2e-05	0.0011	20.2	0.4	1	23	436	459	436	459	0.96
10	12	0.00025	0.013	16.8	1.7	1	23	465	487	465	487	0.98
11	12	8.6e-05	0.0045	18.2	2.4	1	23	493	516	493	516	0.97
12	12	0.0011	0.057	14.7	3.5	1	23	522	544	522	544	0.99

Sequence Information

Coding Sequence: ATGGACAAAATGATACTTTTGGGAGGCTTACATAATTTTGAAGATGTAGACATTACAACAGACAAAGTCCTGGACGCGGAAGTGGAATTGAAAACATTGCACcattccattgacattaaagaagaagCTCCGGTTTTTGAATATCAACAGGATAATAATGAGGAAGCCCATAACCATCCTCGAATTAAGATAGAAGAAGAGGAAAGAGAGTTCAAGATGGAAGAGTTGCACCATTCcattgatattaaagaagagGCTACAATACTGGAATGCAAACCACAAATAACCATAATTTCGACAAAAACTTATGTTGGCAAAAAATTGTTTGCTTGTGAAAGTTGCGATTACAAATTTTCCCGAGAGGCCCACTTGCAAGCTCATTTAAGAACACACACTGGCGAAAGACTGTTTGCATGTGAAATCTGTGGTTGTAAATTTACACGCAAGGATACTTTGAAGGGGCATTTGAAAACTCACacaggcgagaaaccgtttgcgtGCGAAATTTGCGATTACAAATGTTCACGAAAAGGAGACTTGAAAATTCACTTGAGAATTCACACAGGAGAGAAACCATTTAACTGCGATATTTATGATGAAAATAGCAGTCATCAAATTAAGACGGAAGAAGAAgacattaaattcaaaatggaaGATTTACATCATTCCATCCACGCTCAGGATGAGACTTCACTATTAACTATTCAACCAGAAACTTCAAACAATGCGAATGGCAGACATCAAATCAaaacagaagaagaagaaatggaGTTCAAGATGGAAGATTTACATCATTCCATTGATATCAAAGAAGAGATTTCAACAAACTCACCGCGATTtctatgtaaaataatttatgtaaaaactcCTGAAGACAAGGAATTGCTTTCATgtgaaatttgcgactacaaaTCTGCAAATGAAGCAAATTTGACCAGACACTTAAGAACCCATACTGCGGAAAAATCATTTTCATGCAAAATGTGCGATTATAGATGCGCATGGAAAACAACTTTGAAAGTTCACGAGAGAATTCACACTGGAGAGAAACCGTTTGCATGTAGAATTTGCGATTTTAAGTTTTCGCAACTGGGTCACCTGAACGTTCATTTCCTAAGACATAGCGGGGAAAAACCATTTACGTGTGGTACTTGTGAGTACAAATGTGCACGCAAAGGAAATTTAGAAAGACACCTGAAAACtcacactggcgagaaaccatacACATGCGATATTTGCGACTACAAATGCTCGCAAAAATCCCACTTGAAATTACATTTATCatctcataccggggaaaaaccgtttgaatgTAAAATCTGTGACTTCAAGTTCATTCGGAAGGCAACTTTGAAAGATCACATAACAATCGTtcacaccggggaaaaaccgttttcCTGTGAAGTATGTGACTATAAATGCGTACGAAAAGGAACTTTAAAAGATCATGTAAAAATTCATAGCGGCCAGAAGCCGTTTgaatgtgaaatttgtgattataaatgttcacggAAAACAACTTTAAAAGATCACGTGAAAATGATTCATAATGGCAAGAAGCCGTTTCGATGTGAAATGTGTGACTACAAATGTGCGTTGAAACGAAGTCTAAAAGTTCATTTAAAAACCCATACGGGCAAGAAACATTGA
Protein Sequence: MDKMILLGGLHNFEDVDITTDKVLDAEVELKTLHHSIDIKEEAPVFEYQQDNNEEAHNHPRIKIEEEEREFKMEELHHSIDIKEEATILECKPQITIISTKTYVGKKLFACESCDYKFSREAHLQAHLRTHTGERLFACEICGCKFTRKDTLKGHLKTHTGEKPFACEICDYKCSRKGDLKIHLRIHTGEKPFNCDIYDENSSHQIKTEEEDIKFKMEDLHHSIHAQDETSLLTIQPETSNNANGRHQIKTEEEEMEFKMEDLHHSIDIKEEISTNSPRFLCKIIYVKTPEDKELLSCEICDYKSANEANLTRHLRTHTAEKSFSCKMCDYRCAWKTTLKVHERIHTGEKPFACRICDFKFSQLGHLNVHFLRHSGEKPFTCGTCEYKCARKGNLERHLKTHTGEKPYTCDICDYKCSQKSHLKLHLSSHTGEKPFECKICDFKFIRKATLKDHITIVHTGEKPFSCEVCDYKCVRKGTLKDHVKIHSGQKPFECEICDYKCSRKTTLKDHVKMIHNGKKPFRCEMCDYKCALKRSLKVHLKTHTGKKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -