Basic Information

Insect: Cantharis nigra
Gene Symbol: -
Assembly: GCA_958510845.1
Location: OY294029.1:51201369-51205581[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.18 9.2 7.8 7.0 1 23 63 86 63 86 0.90

2 15 1.5e-05 0.0008 20.6 2.9 1 23 92 114 92 114 0.99

3 15 1.3 69 5.0 0.1 2 19 132 149 131 150 0.94

4 15 0.0029 0.15 13.4 3.6 1 23 204 226 204 226 0.97

5 15 1.5e-05 0.00077 20.6 5.6 1 23 232 254 232 254 0.99

6 15 0.00014 0.0075 17.5 0.9 1 23 260 282 260 282 0.98

7 15 0.022 1.2 10.6 0.7 1 23 288 310 288 310 0.94

8 15 5.1e-06 0.00027 22.0 1.9 2 23 317 338 316 338 0.97

9 15 0.019 0.99 10.8 2.8 1 23 344 366 344 366 0.99

10 15 7.2e-06 0.00037 21.6 1.5 1 23 372 394 372 394 0.99

11 15 9.1e-05 0.0048 18.1 6.5 1 23 400 422 400 422 0.99

12 15 0.00014 0.0071 17.6 2.6 1 23 428 451 428 451 0.96

13 15 0.00037 0.019 16.2 0.3 1 23 457 479 457 479 0.98

14 15 7.2e-06 0.00037 21.6 2.1 1 23 485 507 485 507 0.99

15 15 0.0001 0.0053 18.0 0.8 1 23 513 535 513 535 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.18	9.2	7.8	7.0	1	23	63	86	63	86	0.90
2	15	1.5e-05	0.0008	20.6	2.9	1	23	92	114	92	114	0.99
3	15	1.3	69	5.0	0.1	2	19	132	149	131	150	0.94
4	15	0.0029	0.15	13.4	3.6	1	23	204	226	204	226	0.97
5	15	1.5e-05	0.00077	20.6	5.6	1	23	232	254	232	254	0.99
6	15	0.00014	0.0075	17.5	0.9	1	23	260	282	260	282	0.98
7	15	0.022	1.2	10.6	0.7	1	23	288	310	288	310	0.94
8	15	5.1e-06	0.00027	22.0	1.9	2	23	317	338	316	338	0.97
9	15	0.019	0.99	10.8	2.8	1	23	344	366	344	366	0.99
10	15	7.2e-06	0.00037	21.6	1.5	1	23	372	394	372	394	0.99
11	15	9.1e-05	0.0048	18.1	6.5	1	23	400	422	400	422	0.99
12	15	0.00014	0.0071	17.6	2.6	1	23	428	451	428	451	0.96
13	15	0.00037	0.019	16.2	0.3	1	23	457	479	457	479	0.98
14	15	7.2e-06	0.00037	21.6	2.1	1	23	485	507	485	507	0.99
15	15	0.0001	0.0053	18.0	0.8	1	23	513	535	513	535	0.99

Sequence Information

Coding Sequence: ATGCTGATAGTAGGTTTGTTGCAGGACCCACCCTGCGACCCAATTAACTACGTACACATTAAGATAGAAGATGAAGTGGAAGTCAAGCTGGAAGATCTGCACCATTCCATCGACATCAAAGAGGAACCAATGATTATAGAACCTAAAccggaaataaaatttaaacccCAAACCAGCACGAAATCATTTGCATGCAGATATTGTGAACATAAATGTATACATAAACGCAATCTAAAGCGACATGTGGTGAACACCCACTCTCACAAGAAACCGTATCAGTGTGAAATGTGCGGCTATAAATGTGGAACCAACACTTCGTTAAAGTCGCACATAAGAACTCACACTGGGCAACTAAATTCTCATCTGAAAAGTCACTCGGACGAGAAACCGCTTTcgtgtaaaaattgtaattataaggCTGGAACTAAAGGAGATTTAATGATTCATAATGATCCGTGCCACTCGAACAGCTTCTTCCAAATCAAAATAGAAGAGGAGGTGGAAGTCAAGTTGGAAGATTTACATCATTCaattgacattaaagaagagaCTACAATTATAGAATCTCGACCAGATAGAGAATGCAAACCAGAAACAAGCAGGAAGCCATTTGCATGTAAAATCTGTGATAATAGATATACATGTAAACGCAATTTGAAGCGGCATATCATCACTCATTCGGACGAGACTCCGTATAGATGTGAAATTTGCGGACACAATTGCTCGCATAAGGCAAATCTGACGAtccatttaagaactcatacaggcgagaaaccgtatATGTGTGAACTCTGTGATTATAAAAGTGCAACTAACACCAGCCTGAAATTGCACATGAGAAATCATACAGGCGAGAAGCCTTTCGTATGTGAgatttgtgattataaaagtCCAAGTAGCAGTCAACTTAAATTTCATAAAGTAACTCATAATGGCGTGAAATCGCTCAAGTGTGGAATTTGCGGATACAAATGTGCAACTAACAGTACTCTAAAATCTCATATAAGAACTCATACTGGTGAGAAGCCGTACACCTGTGcgatttgtatttataaatgtGCGCATAAGGCAAGCTTGCGAATTCACTTGCGAAGCCACACGGGCGAGAGGCCTTATACGTGTCAAATATGCGACTATAAAGCTACAACTAGCAGTAAGTTAAAATCGCATATCCggactcataccggcgaaaagccgttcAGATGTGAACTTTGCGACTACAAATGTGCAACCAAAACTCATCTGAAATCGCATATGAGAAGTCATACAGGGGAAAAACCGTATCCGTGTGAACTGTGCGACTATAAATGTTCACACAAGGGCAATTTAAGAACCCATTTAATTGTTTCGCATACCGGCGAGAAGCAGTTTCCCTGTAAAACTTGTAATTATAAAGCTGTGACTAAAGGAGATTTGGTAATTCATCTGAGaactcacaccggcgagaaaccatatACGTGTGAGATTTGTGACTACAAATGTTCGCAAAAGGGAAGTTTGAATATACATCTTAGGTCCCATACCGGCGACAAGCCCTATGTTTGTAAACTTTGTAATTACAAAAGTGCTTCTAAAGGACAGTTGaatattcatttaaaaactcaCCAGGACAAATTAGtataa
Protein Sequence: MLIVGLLQDPPCDPINYVHIKIEDEVEVKLEDLHHSIDIKEEPMIIEPKPEIKFKPQTSTKSFACRYCEHKCIHKRNLKRHVVNTHSHKKPYQCEMCGYKCGTNTSLKSHIRTHTGQLNSHLKSHSDEKPLSCKNCNYKAGTKGDLMIHNDPCHSNSFFQIKIEEEVEVKLEDLHHSIDIKEETTIIESRPDRECKPETSRKPFACKICDNRYTCKRNLKRHIITHSDETPYRCEICGHNCSHKANLTIHLRTHTGEKPYMCELCDYKSATNTSLKLHMRNHTGEKPFVCEICDYKSPSSSQLKFHKVTHNGVKSLKCGICGYKCATNSTLKSHIRTHTGEKPYTCAICIYKCAHKASLRIHLRSHTGERPYTCQICDYKATTSSKLKSHIRTHTGEKPFRCELCDYKCATKTHLKSHMRSHTGEKPYPCELCDYKCSHKGNLRTHLIVSHTGEKQFPCKTCNYKAVTKGDLVIHLRTHTGEKPYTCEICDYKCSQKGSLNIHLRSHTGDKPYVCKLCNYKSASKGQLNIHLKTHQDKLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -