Basic Information

Insect: Cantharis nigra
Gene Symbol: -
Assembly: GCA_958510845.1
Location: OY294029.1:47420914-47422356[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.7e-05 0.00088 20.4 1.2 1 23 61 83 61 83 0.95

2 15 0.00023 0.012 16.8 5.2 1 23 89 111 89 111 0.98

3 15 0.031 1.6 10.2 4.0 3 23 119 139 119 139 0.98

4 15 1.2e-05 0.00062 20.9 0.8 1 23 145 167 145 167 0.97

5 15 0.00082 0.043 15.1 1.0 1 23 173 196 173 196 0.97

6 15 0.024 1.3 10.5 0.9 3 23 204 224 202 224 0.98

7 15 0.00015 0.0078 17.4 2.1 1 23 230 252 230 252 0.98

8 15 0.00068 0.035 15.4 0.5 1 23 258 280 258 280 0.98

9 15 0.0047 0.25 12.7 1.2 3 23 288 309 286 309 0.96

10 15 8.6e-05 0.0045 18.2 0.6 1 23 315 337 315 337 0.97

11 15 0.0015 0.077 14.3 3.1 1 23 343 366 343 366 0.95

12 15 0.00076 0.04 15.2 1.6 1 23 372 394 372 394 0.96

13 15 0.036 1.9 9.9 1.8 1 23 400 422 400 422 0.97

14 15 2.1e-05 0.0011 20.1 1.3 1 23 428 450 428 450 0.99

15 15 2.3e-06 0.00012 23.1 0.8 1 23 456 478 456 478 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.7e-05	0.00088	20.4	1.2	1	23	61	83	61	83	0.95
2	15	0.00023	0.012	16.8	5.2	1	23	89	111	89	111	0.98
3	15	0.031	1.6	10.2	4.0	3	23	119	139	119	139	0.98
4	15	1.2e-05	0.00062	20.9	0.8	1	23	145	167	145	167	0.97
5	15	0.00082	0.043	15.1	1.0	1	23	173	196	173	196	0.97
6	15	0.024	1.3	10.5	0.9	3	23	204	224	202	224	0.98
7	15	0.00015	0.0078	17.4	2.1	1	23	230	252	230	252	0.98
8	15	0.00068	0.035	15.4	0.5	1	23	258	280	258	280	0.98
9	15	0.0047	0.25	12.7	1.2	3	23	288	309	286	309	0.96
10	15	8.6e-05	0.0045	18.2	0.6	1	23	315	337	315	337	0.97
11	15	0.0015	0.077	14.3	3.1	1	23	343	366	343	366	0.95
12	15	0.00076	0.04	15.2	1.6	1	23	372	394	372	394	0.96
13	15	0.036	1.9	9.9	1.8	1	23	400	422	400	422	0.97
14	15	2.1e-05	0.0011	20.1	1.3	1	23	428	450	428	450	0.99
15	15	2.3e-06	0.00012	23.1	0.8	1	23	456	478	456	478	0.98

Sequence Information

Coding Sequence: ATGGAAGACATAGATATCAAGCTGGAAGATTTATCGAATTCCattgaaattaaaaacgaaacgttgtatttagaagaattagaaaatggaaaaaatgaaGATATCCAGGAAGAATTGCACcattccattgacattaaagaagagGCCTCGGCTAGCGAAACCCAACTGGACAATCGCAAGTTTTTATGTACAGATTGTGATAAGAGGTTTTCGTTTAAAGGTGACTGGAGGAATCATCTGAAAGTACACACggataaaaaattgttttcctgCCAGGTTTGCGATTATAAGTGTTTTCGAAGATATCTGTTGAAGAATCACATTCGAACTCACACGGGCGAAAAACCACTTGGGTGCAAAATTTGCGACTTTAAATGTTCACACTTCGCAAGTTTAAAAGATCATATGGTAATtcacactggcgagaaaccatttgctTGTGAAGTTTGCGATTACAGAAGTTCGCGAAAAGCAAGTTTGAAGTcgcatttacgaactcataccggcgaaaagccgtttTCGTGCGAATTTTGTGACTTCAACTGTTCCTACGCGGGAAGTTTGAAAAACCATATTATGGTAGCCCATACTGGTGAGAGACCTTTTGGCTGTGAACTTTGCGATTATAGAAGCTcccaaaaacaaattttaaaaagccaCTTAAGAACGCATACGGGCGAGAAGCCGTATCGGTGCAAAgattgcgattttaaatgtgcGGACAGTGCAAGTTTGAAAAATCATGAGCTGACTCATACTGGTGAGAAACCGTTCGAGTGTGGAATCTGTGGTTATACAACTTATctcaaaagtattttaaaaaatcatataaGAACTCACACGGGAGAGAAACCGTTTTGgtgtaatatttgcgattttaaatgttcaaacTCGGTCAGTTTGAAAGACCATGTCTTGGTAACTCACACCAGTGGGACGCTATTTGCATGTGGGATTTGCAATTATAAAGCTACTCGTAAGGCCACCTTGAGATCTCATTTGCgaactcatacgggcgagaagCCGTTCGAGTGTAAAGTGTGCGACTTCAAATGTTCCCACTCCGTCAGTTTGAGGGATCATATTATGGGAACTCACACTGGTGAAATGCCATTTGCATGTCAAATTTGCGAATATAAAACTTTTCGAAAATCTAGTTTGAAATCTCATTTACTTAGTCATACGCGCGAGAAACTGTTTGCGTGTAACGTTTGCGATTACGAAGCTTCTCGAAAAACAAGCTTGAAATGTCATTTACTAACTCACCAGGACGAGAAACCGTTTAAATGTGACAATTGCAATTACAAAAGTGCTCGAAAGGAACTGTTGAAAATTCACATTCGAActcatacgggggaaaaaccgtttgagtgtaaaatttgcaacaataggTTTTCTCAAAAAGGAAGCCTGACCATTCATTTACGAATTCATACAAGGTAG
Protein Sequence: MEDIDIKLEDLSNSIEIKNETLYLEELENGKNEDIQEELHHSIDIKEEASASETQLDNRKFLCTDCDKRFSFKGDWRNHLKVHTDKKLFSCQVCDYKCFRRYLLKNHIRTHTGEKPLGCKICDFKCSHFASLKDHMVIHTGEKPFACEVCDYRSSRKASLKSHLRTHTGEKPFSCEFCDFNCSYAGSLKNHIMVAHTGERPFGCELCDYRSSQKQILKSHLRTHTGEKPYRCKDCDFKCADSASLKNHELTHTGEKPFECGICGYTTYLKSILKNHIRTHTGEKPFWCNICDFKCSNSVSLKDHVLVTHTSGTLFACGICNYKATRKATLRSHLRTHTGEKPFECKVCDFKCSHSVSLRDHIMGTHTGEMPFACQICEYKTFRKSSLKSHLLSHTREKLFACNVCDYEASRKTSLKCHLLTHQDEKPFKCDNCNYKSARKELLKIHIRTHTGEKPFECKICNNRFSQKGSLTIHLRIHTR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -