Cnig008678.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294029.1:6436843-6452070[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.8 2.5e+02 3.3 0.5 3 23 693 712 691 712 0.94 2 18 2.6e-06 0.00013 23.0 1.3 1 23 719 741 719 741 0.96 3 18 2.3e-05 0.0012 20.0 4.2 1 23 747 770 747 770 0.97 4 18 0.016 0.86 11.0 1.5 3 23 778 799 776 799 0.96 5 18 0.15 7.8 8.0 0.1 3 23 807 828 806 828 0.94 6 18 4.3e-05 0.0022 19.2 0.2 2 23 833 854 832 854 0.97 7 18 3.1e-05 0.0016 19.6 1.2 2 23 861 882 860 882 0.96 8 18 0.00018 0.0093 17.2 2.8 1 23 888 910 888 910 0.97 9 18 2.1 1.1e+02 4.4 0.6 3 23 948 967 946 967 0.90 10 18 0.0013 0.066 14.5 5.2 2 23 975 997 974 997 0.96 11 18 0.0096 0.5 11.8 4.5 1 23 1002 1025 1002 1025 0.97 12 18 0.0013 0.066 14.5 2.1 1 23 1031 1054 1031 1054 0.96 13 18 0.00032 0.016 16.4 0.9 3 23 1062 1083 1061 1083 0.98 14 18 0.0038 0.2 13.0 1.4 2 23 1091 1112 1090 1112 0.97 15 18 0.0018 0.097 14.0 0.6 2 19 1119 1136 1118 1139 0.93 16 18 0.00031 0.016 16.4 0.5 1 23 1146 1168 1146 1168 0.95 17 18 0.00041 0.022 16.1 3.5 1 23 1174 1196 1174 1196 0.98 18 18 1.8e-05 0.00095 20.3 5.4 1 23 1202 1224 1202 1224 0.97
Sequence Information
- Coding Sequence
- ATGGATACTCCATCTCTGTGGAGACATATGATCGTGTATTTAGATTCGGATTTAGTTGaAGCCAACACCGTCATGGCCACAAAGTTTTatcatcaatattttcaagCCATGGAATTTTGTTGGAGCAATCCTCGTTTGCCGACTCGTTGGATGCAATATGATTGTCAAGAGTTTGCAAAACGAGCATGCcggatcattttgaaaaaatacggGAATTATTCAAAGGAAGCCATGCTAGATGCAATTTCAGCGGTAAGAAATGGAATGCCAACCGCAACGgcggcaaaaaaatttaaagtaccAAGAGTGACATTGTCGTCTAAAATTAAGGGAAAATACCCCATCGACTGTAAAAGTGGAGCTACCACTATTTTAACATCAGCAGAAGAAAGTCGTTTAGAAAACTGGATTCTAAATATGGCAAAACTGGGATTTTTGGTTACCAAGGAACAGCTATTGGATAGTGTAGCTCTTCTTGTCAAAAAGTTGAACAGGAAAAATACTTTCAATAATGGTCGCCCTGGTAGGCATTGGTATGAAGGTTTTTCAAAACGGCATCCTATGATAAGCGAAAGAATGGCGGCTCAGAATTTGAACAAGGGCAGGAGTATAGTTTCTGAGAATACAATTAGGAAATGGTTTAGCAAAGTTGATGGATACTTCAAGTCGGAAGAAATAGACTTTAAAGACGACCCTCGTCGCATTTTCAATTGTGACGAAACAGTTTTCTCTTTGTGTCCAAACGGGAAAAAGGCAGTTACTAGGAAAGGTGCAAAAACGGCATCCAGTTTTGCGAATGGAAGCGAAAAGGAATGTATCACTGCATTAATTTTGGGAAACGCTGCTGGTGAATTGGTGCCCCCAATGGTTTTATATAGTTACGAGAGAATACCCAAAGATATTCTTCGTCAAATTCCCACAAAATGGACAGTTGGTAAATTAGAGAATGGGCGGATGACCGGAGAGAGTTTCTACGAATATGTAACGGATGTTTTCCATCCATGGCTAGTGAAAAACTCGATTTTGCTTCCTGTTGTGTTGTATGTAGATGGTCACAAATCACATTTTTTAACAATGAGTTTAAGCGAATTTTGTTCAAGGAACCAAATCATTCTGATCAGTCTCATTCCAAATTCAGCCCATGTGTTACAGCCAATGAATGTCGGTATTTTTCACCCTCTGCAGGATGACTGGAAAAAGGTTGTGGAAAATTGGAAACTTGCTAATGAAGGAGAATCAGTAAAGGACAAAAATTTTGGTCCCTTGCTGGATGAAGCAATAAATAACACGTTAAAAAATTCCAATGTTTTGGAAGACGCATTTCGAACATGCGGTTTATTTCCATTTAATCCTGATGATGTTAATTATACAAAACTGGTATCGccagtaaatattaataataatgcagaagaaaaagagaaaattaaGTCTAACCTAACATTTATTGAAAGCTACTTGGAGAAGAATAAATTGAATGAGTTTTACCGTTGTAAAGCCAATAATGCTATTccagaaaatattgaagatagCAGCCTTTATGAGTTGTGGTGTAAAATTGTTAATGATTGTGAAATTGAAATTAGAGAACCAAATGAAGAAGCACATAATATAATAACTGAAGACTTTAATACATCTGATCCGCTATATCTTGAGAATGGTGAAGTAGTATTGGAAGAAGACTGGAAGCACAACATTGTTGATACActgaaagtaaataattgtaCCGACAAAGATTCGGAAAGTGCTGTGACTAACTTAATAACAACTGGTGATGAATCACCAGAAAAGCAATTAAGAGTTGACGAAATGAAAAGCCCTGGTAGGTTAAGTATCTCAAATAAAGAATTACTATCGAAATTGATTCCATCACCACTTTTGTCTAAAAAACGGAATAAAACTATAAAGTGGAAGCGAAGCCAgTCGCTTATGATGATCCAGTCTCAGAATGATAACTCTCATAGATTAGTTGTGCAAAATTccgatacaaaaataaaatcaaaattagttgCAATGGTTGATCTTGAGGAATGGGTGAAAAATCTTGAATTCGTTCACGAACCAAATTTCATTATCAATTGTATGATATGTAATAGACTATTCATGATTAAGGAATTAAGTCGGCATGTGAAATCTCATCGAGACGCAAATCAAGAATTCAATTGTGATATTTGTGGAAAAGTATATTCTACACGGAGAAATCTTAATCGTCACAAGAAAGGGCACAATTCGCAAAAAATGCACACATGCAATATTTGCCCCAAAAAGTTCACTTATGCCCATTTATTGAGAGACCACATGAACACTACCCATTCGGCGAAGAAATCATGGTTTTGTGATATATGTCAGCATtcgtttaaaatcaaaaaagctTTAGATTTGCATATTCGCTCAAGGCACTCGAATGGTGGACCGCATGGATGCGATCTTTGTGACAAAACATTTCCAATTCCGTCCATATTAAAGCAGCACTACCAAGCTTCTCATTCCATAAGTTCGGAATGCCCAATTTGCAATGAAGTATTCCccagttattattatttgcaaaaacataaaaagattCATCAAGAGCCTGTCCATATTGAGTGTCCAAATTGCAATAAAGTTTTCGATAACAAGAGTTTGTTTAGAAGGCATTTTAAACTGCACGGAGCCAAACAGAAATACATGTGCGAGTTGTGTGGAAAAAACTTTACCACCAGATGTAGTCTGAGAGACCATAAGCTCATTCATGCAGGTGTTAAACCGTTCGAATGCCACGATTGTGGCcaATTAGTCCCAATTGATCTCAACGAATGGGTTAAAAGCCTTCAATTGGTTCACCAACCAAATCATATTATCAGCTGTATAATATGTAACCGAATGTTCATGGTGAAGGAATTAAATCGGCATATTAAATTCCACCAAGACGTAAGCCAGCGTTCTAAATGTGATATTTGTGGAAAAGTTTGTTCAAATGCGAGCACTTTATGTTATCATAAGAAAAAGCAACATTCTCAAATTAGGCATACATGCGGAACTTGTCATAAAGAGTTCATCCATGCTCGCGTACTAAAAACACACATGGATACTGTTCATGGAGtggaaaaaccatttttttgcGATATATGTCAGCATTCGTTTAAAATTAAGCAAGCTTTAACTAACCATCTGCGGATTATGCATTCGAATGGTGGACCACATGGATGCCATTTTTGCGATAAAACATTTCCTATTCCGTCTATGTTAACACAGCATTATCGAGTTTCTCATTCACAGAACGAGAAACATACAAAATGTCCACTTTGCAAAGAAGTGTTTTCGAGTTACTATTTTATGCAACAACACAAAAAGATTCACCAAGAGCCTGTCCATATTGAGTGCCCAATTTGTAAGAAAGTTTTTAATAACTTCGCCACGTTTAAACGACATTCTCACGTTTCTGGAGAGAGACAGAAATACTTGTGCGAGTTGTGCGGAAAAGATTTTACTTCTAGAACTAGTCTGAGAGACCATAATATGATTCATTCTGGCACTAAACCGTTCGAATGCCATGATTGTGGCAGTcactttaataaaaaagattccTTACGCACTCACGTCTTGGTGCATTCTGGAATAAAGCCTCATTGCTGTCCAACttgcaagaaaaaattttcCCAAAGAAGTACCTTGATCATTCACATGAGGATTCACACTGGTATTAAAAAGGCATTGATTAAGAACATCCAGTCGCCCCCACCAGAAGAAAATTATGCTAGTCATCAAGCAACACCTAGCAATAATGTTAGAAACACTAATACTGATGATATTGTAACACCTAACATTATGAGTAGTGCTGACTATGCGATggtaataattacattattgcAAGATTTGAAGCAAACGCAGGATCAAAATACGTTAAAAATTGATAACCTCCACAAATTAATGAATGCGAGCCATAATGCAACAAATTTGGTGGCACCAAATCCATTACCTCCTATGCCACTGCAGAATACGCAGGATTTTCTAAATACAGAGTCATATTTAGAAAATCCTGAGATGGAAATCTTGATGGAAAATGACGTCACTGCTGGCTTGCTTGCTTGTTTCCGTACTAGTTTTGCTGATGGTTTATGTGATGGATTTCAGCGCTAA
- Protein Sequence
- MDTPSLWRHMIVYLDSDLVEANTVMATKFYHQYFQAMEFCWSNPRLPTRWMQYDCQEFAKRACRIILKKYGNYSKEAMLDAISAVRNGMPTATAAKKFKVPRVTLSSKIKGKYPIDCKSGATTILTSAEESRLENWILNMAKLGFLVTKEQLLDSVALLVKKLNRKNTFNNGRPGRHWYEGFSKRHPMISERMAAQNLNKGRSIVSENTIRKWFSKVDGYFKSEEIDFKDDPRRIFNCDETVFSLCPNGKKAVTRKGAKTASSFANGSEKECITALILGNAAGELVPPMVLYSYERIPKDILRQIPTKWTVGKLENGRMTGESFYEYVTDVFHPWLVKNSILLPVVLYVDGHKSHFLTMSLSEFCSRNQIILISLIPNSAHVLQPMNVGIFHPLQDDWKKVVENWKLANEGESVKDKNFGPLLDEAINNTLKNSNVLEDAFRTCGLFPFNPDDVNYTKLVSPVNINNNAEEKEKIKSNLTFIESYLEKNKLNEFYRCKANNAIPENIEDSSLYELWCKIVNDCEIEIREPNEEAHNIITEDFNTSDPLYLENGEVVLEEDWKHNIVDTLKVNNCTDKDSESAVTNLITTGDESPEKQLRVDEMKSPGRLSISNKELLSKLIPSPLLSKKRNKTIKWKRSQSLMMIQSQNDNSHRLVVQNSDTKIKSKLVAMVDLEEWVKNLEFVHEPNFIINCMICNRLFMIKELSRHVKSHRDANQEFNCDICGKVYSTRRNLNRHKKGHNSQKMHTCNICPKKFTYAHLLRDHMNTTHSAKKSWFCDICQHSFKIKKALDLHIRSRHSNGGPHGCDLCDKTFPIPSILKQHYQASHSISSECPICNEVFPSYYYLQKHKKIHQEPVHIECPNCNKVFDNKSLFRRHFKLHGAKQKYMCELCGKNFTTRCSLRDHKLIHAGVKPFECHDCGQLVPIDLNEWVKSLQLVHQPNHIISCIICNRMFMVKELNRHIKFHQDVSQRSKCDICGKVCSNASTLCYHKKKQHSQIRHTCGTCHKEFIHARVLKTHMDTVHGVEKPFFCDICQHSFKIKQALTNHLRIMHSNGGPHGCHFCDKTFPIPSMLTQHYRVSHSQNEKHTKCPLCKEVFSSYYFMQQHKKIHQEPVHIECPICKKVFNNFATFKRHSHVSGERQKYLCELCGKDFTSRTSLRDHNMIHSGTKPFECHDCGSHFNKKDSLRTHVLVHSGIKPHCCPTCKKKFSQRSTLIIHMRIHTGIKKALIKNIQSPPPEENYASHQATPSNNVRNTNTDDIVTPNIMSSADYAMVIITLLQDLKQTQDQNTLKIDNLHKLMNASHNATNLVAPNPLPPMPLQNTQDFLNTESYLENPEMEILMENDVTAGLLACFRTSFADGLCDGFQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271038;
- 90% Identity
- iTF_00271038;
- 80% Identity
- iTF_00271038;