Cnig013398.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis nigra
Gene Symbol
-
Assembly
GCA_958510845.1
Location
OY294029.1:49674619-49685208[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.049 2.5 9.5 5.1 3 23 70 90 68 90 0.98
2 20 1.5e-06 7.8e-05 23.7 0.7 1 23 96 118 96 118 0.98
3 20 0.0022 0.11 13.8 0.1 1 23 124 146 124 146 0.97
4 20 0.0037 0.19 13.1 2.1 1 23 152 175 152 175 0.97
5 20 0.0037 0.19 13.0 2.3 1 23 181 203 181 203 0.99
6 20 1.9e-05 0.00099 20.3 3.7 1 23 209 231 209 231 0.98
7 20 0.00052 0.027 15.7 1.1 1 23 237 259 237 259 0.96
8 20 3.4e-06 0.00018 22.6 1.3 1 23 265 287 265 287 0.99
9 20 0.00014 0.0072 17.6 5.8 1 23 464 486 464 486 0.99
10 20 0.00014 0.0071 17.6 2.0 1 23 492 514 492 514 0.98
11 20 0.00056 0.029 15.6 0.8 1 23 520 542 520 542 0.98
12 20 0.0011 0.06 14.7 4.6 1 23 548 570 548 570 0.97
13 20 0.14 7.6 8.0 3.2 1 23 576 598 576 598 0.98
14 20 0.00014 0.0073 17.5 0.8 1 23 604 626 604 626 0.97
15 20 0.0098 0.51 11.7 4.3 1 23 695 717 695 717 0.98
16 20 0.0054 0.28 12.5 0.7 1 23 723 745 723 745 0.98
17 20 0.00066 0.035 15.4 5.8 1 23 751 773 751 773 0.99
18 20 0.051 2.7 9.5 7.1 1 23 779 801 779 801 0.98
19 20 0.0011 0.057 14.7 2.9 1 23 807 829 807 829 0.99
20 20 0.0057 0.3 12.5 3.2 1 23 835 857 835 857 0.95

Sequence Information

Coding Sequence
ATGGATACTCCATGCGATTCAGATAGCCACTCCCACATTAAGGTAGAAGAGGACGAAGTGGAAATCAAGTTGGAAGAACTGCACCATTCcatcgacattaaagaagaGGCTTCGATAGTTATAGCATCTCTGCCCGATAGAAAATGGAGACCGGGTATAAAAGGAAAAACTCATTTAAGTATTGCTACCGGCGAGAAACCCTTTGGTTGTGAGTTTTGCGCATATAAATGTGCCCGGAAGACCCACTTGAAGAGTCATGtgagaactcataccggcgagaagccGTTTACCTGCGAAATTTGCGGTTTTAAGTTTAATCAAAAGGGAAGTTTGAAAATTCACTTAAGAATtcacaccggggaaaaaccgtttgccTGTGAATTGTGCGATTATCAGGGTGCATATAAGGGAGATTTAACGGtgcatttaagaactcatacgggcgagaaaccatttccgtgtgaattttgtgactataaatgcgCACGTAAGGAGCGGTTAAAAATTCACGTAAGAATTCGGCATACGGGCGAGAAACTGTTTACATGCGGAATGTGCGAATATAAAAGTGGACACAAGGGGAATTTTACGATCCACCTAAGAACCCATACGGGCGAGAGGCCGTTTACCTGCGATATTTGTGATCATACATTTGCAAATAACGGTTGCCTGAAGAGGCACTTAAAAATCCATtcaggggaaaaaccgtttactTGCGAACTTTGTAACAATAAGTTTTCTGATAGAGGTAGTTTGAATAAACATTCAATCAGTCATACGGACCAGAAACCGTTTACGTGTGAAATTTGCGATTATAGAAGTTCACGCAAAgccaatttaaaaatgcatttaagaactcatactggcAATTTGCCATCCGAAGTTCAACCTAACCTCAAAATTAATTCTACAATTGGTGGAACTTCTGCTTCCATTATGGACAGGATGATACATTTAGGAGAGTTTAATAAATCTGAAGAAGATATCAATAATTTGCAAGCTTCCAGTCATGGATACAGCAATGACGAGCTTAGATCGGACGAAATGAAGAACAAGTTTACATCGGACAAAATGGAGAACATCGAGGTCAAGCTGGAAGACTTGCACCATTCcattgatattaaagaagatACTGCAATTTTAGATTATGAACAGGATAGTAAAGAGGAATCTTCAAACCAATCAAACGGCTACCTTGAAATTAAGACCGAAGAAGATGTGGTGGTCAAGTtggaagatttgcatcattcgatcgacattaaagaagaaactTGTAATCTAGAATGTCAGCAGTGTGGAGAATTCGAATCGGAAAGAAATCAAAAACCGGTTAAAGGCAAAATTTGTGACGCCGAAGGAGAAGAAAACACTTGTACCGGTCGGAAACCATTTAAGTGTCATATATGTGGTTACAAGTACGCACATTCAagtgaatttaaaattcattttagaaTGCACACTGGTGAAAAGCCATTCATGTGCGGAATTTGTAATTATACGTGCGCCCGTCGAGGTCagttaaaatatcatttaagaATTCATTCTGGAATAAAACCGTTTACCTGTAAAATCTGTTCGTATAAATCTGCGCGTAAAGCAGATTTGGAAATTCATTTAAGATTTCACACTGGCGAGAAGCCGTATACGTGCGAGATTTGTGGCCATAAATGTGCACGTAAGGGCTGTTTAGAAAGACACGTAAAAGCTCATGCTGGAGAAAAACCATTCGTTTGCTATACATGTGGACATAAAAGCGCACGTAAAACGGACTTGACATTCCATTTGCGatctcatactggcgagaaaccgtaccaGTGCTTAATTTGCGACTATAAGTGTGCACGCAAAGGATCTCTAGAAAGACATTTAGGAATTCATAGCGGCGTAAAATCCTTCAGGTGCAAATTTTGCGACTATAAATGTGAACCTCCGTATGATTCAAATAGCTATGATGAAGTTAAGACGGAAGAAGTGGAAGTGAAGCTGGAAGATCTGCATCATTCCATTTTCATCAAAGAAGAGCCTGTATGTTTAGAATCGCAATCGGAGACAGAATGCAAAGCGGAATCAAGTGGAAAACCGTTTACGTGTGAgttttgtgactataaatgtgcaGCGAGAAGTACTTTAAAGAGGCATACGACAACCCATACTGGCGAAAAGCCCTATTCGTGTGGAATTTGTATTTACAAATGTGCAACTAAAGGAGATTTAAATGTTCATGTGAGAACccacaccggcgagaaaccatacAAGTGTAAAATCTGTGATTTTAAAAGTGCTCATTGTAAAAGCTTAATAAGACATATCaggactcatactggcgagaaaccgtttagTTGTGATATTTGCGATTACAAATGCACTTGCAAAGGACACCTGAACACACATTTAAGAATTCATACCAACGATTACCCGTTTACCTGTGAGATTTGTAGCTATAAATGCGCACAAAAAGGGAAGTTCGAAGAGCATTTACGAACTCATTCCGGTGAGAAACCGTTCGTTTGCCAAATTTGCGACTTTAAATGCGCACGGAAGAGCAGCATGAAAAGACATTCCATAAATCATTCCAACGAGAAACCTacagaaaatatataa
Protein Sequence
MDTPCDSDSHSHIKVEEDEVEIKLEELHHSIDIKEEASIVIASLPDRKWRPGIKGKTHLSIATGEKPFGCEFCAYKCARKTHLKSHVRTHTGEKPFTCEICGFKFNQKGSLKIHLRIHTGEKPFACELCDYQGAYKGDLTVHLRTHTGEKPFPCEFCDYKCARKERLKIHVRIRHTGEKLFTCGMCEYKSGHKGNFTIHLRTHTGERPFTCDICDHTFANNGCLKRHLKIHSGEKPFTCELCNNKFSDRGSLNKHSISHTDQKPFTCEICDYRSSRKANLKMHLRTHTGNLPSEVQPNLKINSTIGGTSASIMDRMIHLGEFNKSEEDINNLQASSHGYSNDELRSDEMKNKFTSDKMENIEVKLEDLHHSIDIKEDTAILDYEQDSKEESSNQSNGYLEIKTEEDVVVKLEDLHHSIDIKEETCNLECQQCGEFESERNQKPVKGKICDAEGEENTCTGRKPFKCHICGYKYAHSSEFKIHFRMHTGEKPFMCGICNYTCARRGQLKYHLRIHSGIKPFTCKICSYKSARKADLEIHLRFHTGEKPYTCEICGHKCARKGCLERHVKAHAGEKPFVCYTCGHKSARKTDLTFHLRSHTGEKPYQCLICDYKCARKGSLERHLGIHSGVKSFRCKFCDYKCEPPYDSNSYDEVKTEEVEVKLEDLHHSIFIKEEPVCLESQSETECKAESSGKPFTCEFCDYKCAARSTLKRHTTTHTGEKPYSCGICIYKCATKGDLNVHVRTHTGEKPYKCKICDFKSAHCKSLIRHIRTHTGEKPFSCDICDYKCTCKGHLNTHLRIHTNDYPFTCEICSYKCAQKGKFEEHLRTHSGEKPFVCQICDFKCARKSSMKRHSINHSNEKPTENI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-