Cnig013067.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294029.1:47181393-47182655[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.1e-05 0.00057 21.0 0.6 1 23 61 83 61 83 0.97 2 13 6.7e-06 0.00035 21.7 6.5 1 23 89 111 89 111 0.99 3 13 0.00018 0.0097 17.2 4.3 1 23 117 139 117 139 0.98 4 13 7e-05 0.0037 18.5 7.7 1 23 145 167 145 167 0.99 5 13 0.00053 0.028 15.7 4.1 1 20 173 192 173 193 0.97 6 13 1.8e-05 0.00095 20.3 1.9 1 23 201 223 201 223 0.98 7 13 5.1e-05 0.0027 18.9 6.4 2 23 230 251 229 251 0.97 8 13 2.8e-06 0.00015 22.9 4.3 1 23 257 279 257 279 0.99 9 13 0.00014 0.0071 17.6 3.7 1 23 285 307 285 307 0.99 10 13 6.5e-05 0.0034 18.6 4.2 1 23 313 335 313 335 0.99 11 13 1.9e-05 0.001 20.3 3.9 1 23 341 363 341 363 0.99 12 13 0.00046 0.024 15.9 1.6 1 23 369 391 369 391 0.97 13 13 1.8e-05 0.00093 20.3 2.3 1 23 397 419 397 419 0.98
Sequence Information
- Coding Sequence
- ATGAAGGTGATCTCTTTAAACGAATTACCAAATACTAGAAATACAATTAAAACGGAGGACATAGAAACGGAAGAGTTACATCATTCCATCGAGATTAAAGAGGATGTTGCAATTAAGGAGGAGATATTTGCAGAAGAATGGGAACAGATTAAAATTGAAGATACGGTAAAAGACAAACCGTTTGCATGTAACATTTGCGGTTACAAATGCAGTCAGAGAGGAAGCTTGGCAATTCATTTACGTGTCCATACTGGAGAGAAACCGTTTGaatgtaacatttgcgattataaatgttccagAAAGGAACATTTGAAAACCCATTTACGTACTCATACTGgagagaaaccgtttgagtgcaacatttgcgattataaatgttcttaCAAAAAATCCTTAAAAGATCATATTTTTACCCATACTGGTGAGAAGCCATTTAAGTGTAACATATGCAATTATAAATGTTCCAGAAAAGCACATTTGAAAACCCATTTAAAAAGCCACTCCAGTGAAAAGCCATTTaagtgtaacatttgcgatttCAAATGTTCCCGAAAAGAGCATTTGAAATCTCATTTAGTCTGTCATACAGGTGAAAAGCCGTTTGAGTGcaacatttgtgattataaaagtTCTCACAAAGGAACTTTGACTGTTCATTTACGTATGCATGCAGGTTTGAAACTGCTTAAATGTAATATGTGCGATTATAAATGCTCCCGAAATTCACATTTGAAAGATCATTTAAGAAGTCATACCGGTGAAAAGCCGTTCAAATGCAGCATTTGCGATCATAAATTTTCTCACCAAGGATCATTGAAAGTTCATTTGCGTATTCACACTGGCGAGAAGCCGTTTGAATGCAACTTTTGCGATTACAAATGTTCTCAAAAGGGATCTATGACTGTTCATTTACGTACTCATACTGGTGAGAAGCCCTTtgagtgtaacatttgcgattttaaatgttcttccAAAGGATCTTTCAGAAGTCACTTACGTACTCACACTGGCGAGAAGCCGTTTAAATGcaacatttgtgattataaatgttctcagaAGCGAACGTTGGCTGATCATTTACGCACTCATTCCGGTGAGAAGCCGTTTGACTGCAACTTTTGTGATTACAAATCTTCTCAGAAGGGAACTATGACGGTTCATTTACGTACTCATACTGGCacgaaaccgtttgagtgtaacgtttgcgattataaatgtattCGAAATGCAGATTTGAAACGTCATTTACAAAGGCACACTTAG
- Protein Sequence
- MKVISLNELPNTRNTIKTEDIETEELHHSIEIKEDVAIKEEIFAEEWEQIKIEDTVKDKPFACNICGYKCSQRGSLAIHLRVHTGEKPFECNICDYKCSRKEHLKTHLRTHTGEKPFECNICDYKCSYKKSLKDHIFTHTGEKPFKCNICNYKCSRKAHLKTHLKSHSSEKPFKCNICDFKCSRKEHLKSHLVCHTGEKPFECNICDYKSSHKGTLTVHLRMHAGLKLLKCNMCDYKCSRNSHLKDHLRSHTGEKPFKCSICDHKFSHQGSLKVHLRIHTGEKPFECNFCDYKCSQKGSMTVHLRTHTGEKPFECNICDFKCSSKGSFRSHLRTHTGEKPFKCNICDYKCSQKRTLADHLRTHSGEKPFDCNFCDYKSSQKGTMTVHLRTHTGTKPFECNVCDYKCIRNADLKRHLQRHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -