Cnig012944.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis nigra
Gene Symbol
-
Assembly
GCA_958510845.1
Location
OY294029.1:46464889-46470911[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 5.3e-07 2.8e-05 25.1 1.4 1 23 169 192 169 192 0.98
2 14 1.3e-05 0.00065 20.8 0.1 1 23 198 221 198 221 0.97
3 14 0.00012 0.0061 17.8 5.2 1 23 227 249 227 249 0.98
4 14 3.3e-05 0.0017 19.5 3.6 1 23 255 277 255 277 0.98
5 14 0.018 0.94 10.9 2.2 1 23 283 305 283 305 0.98
6 14 2.3e-05 0.0012 20.0 3.9 1 23 311 333 311 333 0.99
7 14 0.00026 0.014 16.7 4.2 1 23 339 361 339 361 0.99
8 14 6.2e-06 0.00032 21.8 2.4 1 23 367 389 367 389 0.98
9 14 8.8e-06 0.00046 21.3 3.6 1 23 395 417 395 417 0.99
10 14 0.012 0.65 11.4 3.3 1 23 423 445 423 445 0.98
11 14 3.2e-07 1.7e-05 25.9 1.8 1 23 451 473 451 473 0.99
12 14 0.23 12 7.4 8.7 1 23 479 501 479 501 0.99
13 14 0.00098 0.051 14.9 7.1 1 23 507 529 507 529 0.99
14 14 2.6e-05 0.0014 19.8 2.1 1 23 537 559 537 559 0.99

Sequence Information

Coding Sequence
ATGGATATCAAGCTGGAAGACGTCCATCATTCCATTGACACCACGGCGACTTCTTCAATTAATTCAGAAGTAGAATATGGTAGCAAACATATCAAAATCGAGCCGAATGATGTGGATATTGAGCTGGAATCcttgcatcattccattgacattaaagacGAGACGATTACAGGAAGAGGTTGCCAATTGCAACTTCGAGTTCATGCAAAAACTCCTACGGATGAAGAGTTTTGTACCGGTTTAGACATGGATATCAATATGGAAATTGATACCGCAACTAATACTTCGATTAATGCAGAAATAGAAAATGGAAACGAACATATTAAAGTTGAAGAGATGGAAGATATGGATATCAAACTGGAATCGCTGCATCATTCCATAGATATTAAAGAAGAGATTTTAGTGATCGACTCTCGATTGGATCAATTGCAACCAGTAGTTCATACAAAAACTCAAACCCGTAGAAAGGCGTTGGACTCacgaactcataccggagaGCAGTCGTTCCAGTGTGCTGTTTGCGGTTATAAATTTTCtcgaaaaaataatttgagtAAGCATATTAAACGAATTCATACCGGCGGAATATCGTTCGAGTGTGCAGTTTGCGGTTACAATTTTCCACGGAAATGGGATTTGAACGACCATATTAAACGAATTCATACCGGCAAGAAACCGTTCATCTGTGCAGATTGCGGTTGCAGATTTTCTCAGAACTGCCATTTAATTCAGCATTTACGAATTCATACaggcgaaaaaccgtttaagTGTACAGTTTGCGATTACAGATGTTCTCAAAAATCTGCCTTGAAAGTCCATTTATATACTCATACCGGAGAGAAACCGTTTGTATGTGCAGTGTGTGATTATAAATGctaccaaaaaaatgttttacgtAATCATTCACGAATTCATACTGGGGAAAAACCATTCGAGTGTGatgtttgcgattttaaatgttctcaaaACAGAAATCTGAAACAACATTTACGTACTCATacaggcgagaaaccatttaaatgttctgtttgcgattataaatgttcgcaAAAAAAACGTTTGACAGTGCATTTACGAATTCATAACGACGACAAAACATTCGAGTGTAAGGTTTGTGATTCGAAATTTTCACGAAAAGAGCATCTAAAAGTACATGTACGAATTCATACTGACGAAAAACCGTTCAAATGTAATGTTTGCGACTATAGCTGTAGTAAAAAGTATGATTTAACAGTTCATGtgcgaactcataccggcgaaaaaccgttcgagtgtaCAGTTTGCAGTTTTAAATGTTCCGCAAAAAAGTATTTGCAAAACCATTTACGAGCtcataccggtgagaaaccatACCAATGTACAATTTGTGATTCTAAATTTACTCGAAgagaaaatttgaaagttcatttacgaactcatagcGGCGAAAAACCTTTCAAATGTAATCTATGCAATTACAGATGTTCTaaagattataatttaaagtgtcatttacgaactcataccggcgaaaaaccgtttaaaTGTGATGTTTGCAAGTTTAGATGTTCACGAAAACATGATTTGAAAGGTCATTTACGTACTCATACTGGCAAGAAGCGTGTGGAGTACGAGTGTGCAGTTTGTGGTTTTAAATGTtcccaaaaaagagatttaagAAATCATATACAAACTCATACTGGCAGAAAACCGcccaagtag
Protein Sequence
MDIKLEDVHHSIDTTATSSINSEVEYGSKHIKIEPNDVDIELESLHHSIDIKDETITGRGCQLQLRVHAKTPTDEEFCTGLDMDINMEIDTATNTSINAEIENGNEHIKVEEMEDMDIKLESLHHSIDIKEEILVIDSRLDQLQPVVHTKTQTRRKALDSRTHTGEQSFQCAVCGYKFSRKNNLSKHIKRIHTGGISFECAVCGYNFPRKWDLNDHIKRIHTGKKPFICADCGCRFSQNCHLIQHLRIHTGEKPFKCTVCDYRCSQKSALKVHLYTHTGEKPFVCAVCDYKCYQKNVLRNHSRIHTGEKPFECDVCDFKCSQNRNLKQHLRTHTGEKPFKCSVCDYKCSQKKRLTVHLRIHNDDKTFECKVCDSKFSRKEHLKVHVRIHTDEKPFKCNVCDYSCSKKYDLTVHVRTHTGEKPFECTVCSFKCSAKKYLQNHLRAHTGEKPYQCTICDSKFTRRENLKVHLRTHSGEKPFKCNLCNYRCSKDYNLKCHLRTHTGEKPFKCDVCKFRCSRKHDLKGHLRTHTGKKRVEYECAVCGFKCSQKRDLRNHIQTHTGRKPPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-