Cnig017730.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis nigra
Gene Symbol
-
Assembly
GCA_958510845.1
Location
OY294031.1:1834498-1836885[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.29 15 7.1 0.5 1 23 218 240 218 240 0.95
2 18 0.00018 0.0092 17.2 2.2 2 23 247 268 246 268 0.97
3 18 0.00016 0.0082 17.4 0.2 1 23 274 296 274 296 0.98
4 18 0.00047 0.025 15.9 2.4 1 23 302 324 302 324 0.98
5 18 6.2e-06 0.00032 21.8 1.4 1 23 330 352 330 352 0.99
6 18 0.0001 0.0054 17.9 0.5 1 23 358 380 358 380 0.99
7 18 3.5e-06 0.00018 22.6 2.8 1 23 386 408 386 408 0.99
8 18 0.00024 0.012 16.8 1.3 1 23 414 436 414 436 0.98
9 18 0.0037 0.19 13.0 0.7 1 23 442 464 442 464 0.98
10 18 2.4e-06 0.00013 23.1 1.5 1 23 470 492 470 492 0.99
11 18 0.00033 0.018 16.3 3.9 1 23 498 520 498 520 0.98
12 18 4e-06 0.00021 22.4 0.1 1 23 526 548 526 548 0.99
13 18 4.4e-05 0.0023 19.1 3.9 1 23 554 576 554 576 0.99
14 18 2.6e-05 0.0014 19.8 0.3 1 23 582 604 582 604 0.99
15 18 3.3e-05 0.0017 19.5 4.7 1 23 610 632 610 632 0.99
16 18 0.00026 0.014 16.7 0.2 1 23 638 660 638 660 0.99
17 18 5.2e-05 0.0027 18.9 2.5 1 23 666 688 666 688 0.99
18 18 0.0063 0.33 12.3 5.9 1 23 694 716 694 716 0.99

Sequence Information

Coding Sequence
ATGCATTCCAGCATATGCCGTGTTTGTTTGCAACAAATTAACGATTCCTTACGTATTTATTATTTGGATAGCGTGGAATCTTGCGATTCGACGAGTGTCCGGCAAAAATTAGATGATTTAGCTTTAGACATTAACTTGAATATAACTCCAAATGCCGTTGTTTGTATCGAATGCTGGAACTCTATCGATTCGGCTTACAATTTCAGGAGGAGGTGCATggaaactgagcaaaaaatacaaaattatgtaaataagaTGGGGTATAATTTTGCTTATATTGATTTGGGACAGGTGGTAAAGCAAGATCTGGAGTTGACTAATTTTGAGGTTAAAATAAAGCAAGAAAAAGAAGACGAAGATTCGTACCCCACCGATGATAATGGCTTGCGTAACATTAAACAAGAACCTCTGGACAATGATTACGAAGCCGAGGCCGATTTGCCTATTCCAGCTGCAGACGAAGACGAACAAGAGAATCttaccaattttaaaattatagatgTCAAAACTGACAAGGCTGAAGACAATGATGAACCCGAAAGTCTGCTTGTTGCATCTAAGAACGAAGTTGAAGAACCGAAGGAATTTGTAGGCGGTGAAGTGATAATTCCCAACCGCAAATATATGAAAACTATCATAGGAAAGCAGTCGTACTTGTGTAATGTTTGTGGTTACCGGACGGCACTAAAGAGGCGGTTAGCTCTTCATACCAAACTTCACGAGGAAGATAGATTGTTGAAATGCACCCAATGCAGTTATGTGTGTGCACAAAGaagcaatttaaatattcatactCGGATTCACACCGGATACAAACCTTACAAATGTCAGGAGTGCGATTACAGTACAGTTTCCAATTCCGCTCTTGTGGTGCACAACAGAATCCATACTGGAGAAAAACCATACTGTTGTAACGTTTGTGGTCATAGCACCATATCGAAGTCGGCGTTAACGGTTCATTCTCGCATTCATACCGGAAGTAAACCGTACAAATGCACCGTTTGTACGTATCGCACCATAACCAAATCCTCTTTAATTGTTCACATGCGTACGCACACGGGAGATAGGCCCTACAAGTGTACACTATGTACCTATAGCACGACTGCTAAATCGGCCCTGAACGTTCACATCAGAATACACGAAGGTAACAAACCGTTTCAATGCCCACACTGTGACTATAAGTGTGCCCAACGAAGCGGCCTTAACGTTCACATGCGTGTACATTCGGGCGAAAAGCCCTATCAATGCATCGAGTGCAAGTACAAAACCAGCAGCAAAAGCAGTTTGGTGGTTCACATGCGAACACACACCGGAGAGACTCCATACCACTGTACGGTTTGCAATTACAGCACTGCAGCCAAGTCGGCCTTAAACGTTCACAGCAGAATCCACGGTGAAAATAAACCGTTTAAGTGTTCCGAGTGCGGTTACAGATGTGCCCAACGGAGCGGACTGACCGTTCACATGCGGATTCACACCGGCGATAAGCCGTACAAGTGCTCACAGTGTGACTATAGATGCAGTTACAGGGGAAATTTGAAGGTACACAACCGCGTTCATACGGGCGAAACGCCGTACAAGTGTAACGTCTGCGGGTACAGCACCACTGCGAAATCAGCGCTGATAGTTCATATGCGCATTCACACTGGTGAAAAGCCATACAAATGTGGAGATTGTTCCTACAAGTGCAGCACCAAAAGTAGCCTCAAAGTGCACACTCGCGTTCACACAGGTGAAACTCCGTACAAATGTAGCGTTTGTGATTATCGAACGACTGCAAATTCTGCACTGGTGGTGCATATGCGCACCCATACCGGCGAGAAGCCCTACAAGTGTACCGACTGTTCGTACCGATGTAGCAACAAGAGTAGCCTGAAAGTTCACACCAGAATACATACGGGCGAAACTCCGTTCAAGTGTACAGTGTGTGAGTACCGAACGACGGCGAATTCTGCGCTGGTTGTTCACATGAGAATACACACCGGCGACAAACCATACAAGTGCGGTGATTGTGCGTATAGGTGTAATAATAAAAGTAGTTTACGTGTCCACATGAAAGTGCACATGGGAAGAACGCCTTATAGGTGCAAGATATGTTCTTATAGTTGTAAGAAGCGTTTCATTCTAAAAAGACATATGCGTATTCACGCACAAGAAAACGAAAATCAAAGCGAATCTGCGGTGGTGGTGACTGTGGAGGATAACGAAAACAATGCCGAAGACTGCGTGGTGGCCGTAGAAGATAACCAAGCTCAGAAGGAAGACGAGGTTGTGACCATCGAAGACGATGAACCTAACGTGGAAGGAGAAGAAAATAAAGTAGGCCAGTAA
Protein Sequence
MHSSICRVCLQQINDSLRIYYLDSVESCDSTSVRQKLDDLALDINLNITPNAVVCIECWNSIDSAYNFRRRCMETEQKIQNYVNKMGYNFAYIDLGQVVKQDLELTNFEVKIKQEKEDEDSYPTDDNGLRNIKQEPLDNDYEAEADLPIPAADEDEQENLTNFKIIDVKTDKAEDNDEPESLLVASKNEVEEPKEFVGGEVIIPNRKYMKTIIGKQSYLCNVCGYRTALKRRLALHTKLHEEDRLLKCTQCSYVCAQRSNLNIHTRIHTGYKPYKCQECDYSTVSNSALVVHNRIHTGEKPYCCNVCGHSTISKSALTVHSRIHTGSKPYKCTVCTYRTITKSSLIVHMRTHTGDRPYKCTLCTYSTTAKSALNVHIRIHEGNKPFQCPHCDYKCAQRSGLNVHMRVHSGEKPYQCIECKYKTSSKSSLVVHMRTHTGETPYHCTVCNYSTAAKSALNVHSRIHGENKPFKCSECGYRCAQRSGLTVHMRIHTGDKPYKCSQCDYRCSYRGNLKVHNRVHTGETPYKCNVCGYSTTAKSALIVHMRIHTGEKPYKCGDCSYKCSTKSSLKVHTRVHTGETPYKCSVCDYRTTANSALVVHMRTHTGEKPYKCTDCSYRCSNKSSLKVHTRIHTGETPFKCTVCEYRTTANSALVVHMRIHTGDKPYKCGDCAYRCNNKSSLRVHMKVHMGRTPYRCKICSYSCKKRFILKRHMRIHAQENENQSESAVVVTVEDNENNAEDCVVAVEDNQAQKEDEVVTIEDDEPNVEGEENKVGQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01292028;
90% Identity
iTF_00272977;
80% Identity
-