Cnig013544.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis nigra
Gene Symbol
-
Assembly
GCA_958510845.1
Location
OY294029.1:50999508-51003800[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 6e-06 0.00031 21.8 1.4 1 23 103 125 103 125 0.98
2 21 0.0035 0.18 13.1 0.8 3 23 133 153 131 153 0.98
3 21 0.0072 0.38 12.1 5.5 1 23 159 181 159 181 0.97
4 21 0.00048 0.025 15.8 0.5 1 23 187 209 187 209 0.98
5 21 0.00025 0.013 16.8 3.7 1 23 215 237 215 237 0.98
6 21 0.012 0.64 11.4 2.4 1 23 243 265 243 265 0.94
7 21 0.001 0.054 14.8 1.2 1 23 271 293 271 293 0.98
8 21 7e-06 0.00036 21.6 1.4 1 23 299 321 299 321 0.97
9 21 0.00088 0.046 15.0 2.4 1 23 396 418 396 418 0.97
10 21 1.9e-05 0.001 20.2 1.3 1 23 424 446 424 446 0.98
11 21 0.00011 0.0056 17.9 3.9 1 23 452 474 452 474 0.97
12 21 0.00059 0.031 15.6 5.4 1 23 480 502 480 502 0.97
13 21 5.9e-05 0.0031 18.7 6.5 1 23 509 531 509 531 0.99
14 21 0.00079 0.042 15.2 0.3 1 23 537 559 537 559 0.99
15 21 6.7e-05 0.0035 18.5 6.4 1 23 565 587 565 587 0.99
16 21 2.7e-05 0.0014 19.8 0.1 1 23 593 615 593 615 0.99
17 21 1.7e-05 0.00087 20.4 3.8 1 23 621 643 621 643 0.99
18 21 0.00077 0.04 15.2 0.4 1 23 649 671 649 671 0.99
19 21 0.0024 0.13 13.6 2.2 1 23 677 699 677 699 0.97
20 21 0.0012 0.064 14.6 0.1 1 23 705 727 705 727 0.99
21 21 0.011 0.56 11.6 3.5 1 23 733 755 733 755 0.99

Sequence Information

Coding Sequence
ATGGACGACATGGAAGTCGAATTAAAAGATCTGCACCATTCCATTGATATCAAAGTAGAAGATGAACCGATTTCAGAAAATCAACAGGATAGCAATGAGGAGACTCCAGGTCTCGGAAATAGCCAATCAAGAATTAAAACGGAAGAAGTGGAATTCAAGATAGAAGATTTGCATCAATCCATTGATATCAAAGATGAGACCTCGAAATCCGAATCCTGGCTGGATACCGAATGTAAACCAGAAACAAACGggacaaaactaaaatttaaagtgATGTATTTCAAGACTCCCACAGGCAAGAAACAATTTCCATGTGAAATTTGTCACAATACATTTACTCGTGAAGGAAGTCTGAaaatacatttacgaactcacaccggggaaaaaccgtttggttgtgaaatttgcgattttaaaagTTCTCGGAAAGAATACATAAAAAAGCATATGTTAATGCACACCGGGGAAAAACGGTTTTCGTGTGAAATGTGCGACtacaaatgttttcaaaaaactCACTTGCAGTTGCATTTAGCAACGCATACTGGCGTGAAACCGTTTGAATGCgaaatttgcgactacaaaTGTGCAGCAAAAGCTAGCTTAAAAGTTCACCTAAAAGTtcacaccggggaaaaaccgtttacgTGCGATATTTGCGACAGTAAATTTGCACATAGGGCGCATTTTAAAGCTCATTTGAGACTTCATACGGGAGAAAAACCGTTTAAATGCGAAATTTGCGACTTCAGATGTGTGCGTAAATTGCAATTGAAATCTCATTCGGTGGTCCATTCAGACAGTAAAGCATTCAATTGTGGAATTTGCTATCGCAAGTTTTCAATGAAAGCTCGCTTGAAACTGCACTTGAGAATTCACACTGGCGAAAAGCCATTTGaatgtgaaatttgtaacaGAAGATTTACCCATAAAGAAAGTTTGAAAGCCCATGGGGCGACTCATTCTTCGGAGAAGGGGttttcatATCATGCAAGCATTCCCTTTCAAATTAAGACTGAAGAAGAAATGGAGATCAAGTTGGAAGACTTACATCATTCCATTGATATTAAAGAGGAGACTTCAGTTGTAGAACATCAACAGGAGATAGAATTCAAACCCCAGACCAGCAATACGCAATTGGCATGTAAAATTAGTCCAAGCAAAAGTCACACGGTTGAAAAACCGTTTGCATGTGTTCTTTGCGACTATAAATGTGCCCAGCGGGCGCAATTGACCAGACATTTTCGAACTCACACCGGAGAGAAACCATTTACTTGCGAAATTTgcgataataaattttcacgtAAGAGTACTTTGCAgattcattcaaaaattcataaaggCGAGAAACCATTCGCTTGCGAACTTTGCGACTATAAATGTACGCAGAAGGGAAACTTTAAAACGCATTTAAGAACCCACACAGGCGAAAAGCCTTTTGCATGTgaattttgtgattataaatgcaCACACAAAGGAAGCCTGAAGGATCACTTAAGAACTCACACGTCAGACGAAAAACCGTACTCATGTGAACATTGTGATTACAAATATGCACATAAAAGCAgttttcaaaatcatttaagaactcacacAGCCGAGAAACTGTTTAAATGCGGAACATGCGAGTATGAAAGTGCAAAGAAAGCTGATTTAACAGTTCACTTAAGAACccacaccggggaaaaaccaTTTACATGTGAAATTTGTGGCTGCCATTTTGCACATAAAAGAAGTTTAACAATTCACTTGAGAACTCACACAGGCGAGAAGCCGTTTAAATGTGAAATATGCGGTTATCAAAGTGCGCAGAAAGGAGATTTAACAATTCATTTGAGAATtcacaccggggaaaaaccgtacaCGTGTGATATTTGCGGTTATAAGTGTGCACATAAGGGTAGTTTGACAagtcatttaagaactcatacagGCGAGAAACTTTTTAAATGTGAGATGTGCAGCTATGAAAGTGCAAAGAAGGGAGATTTGACCATTCATGTACGAACGCACACTGGCGAGAAGCCGTTTGCGTGTGAAATGTGCGATTATAAATGCGCACATAAAGTAAGTTTAAGAATACATTTGATCAGCCATACAGGTAAAAAGCCATTTAAATGTGGAATATGCGACTACGGAAGTGCACTGAAGGGAGATTTAACAATTCATTTAAGATCTCATACAGGGGAAAAACCGTATACGTGTGAGTTCTGTTGCCTTAAATTTGCACGTAAAAGAGAATTAACAGTTCATTTAAACACTCACACTGCCTTACAAGAAGCTGTTTCTGTGTCAACTACTGGAATTTGA
Protein Sequence
MDDMEVELKDLHHSIDIKVEDEPISENQQDSNEETPGLGNSQSRIKTEEVEFKIEDLHQSIDIKDETSKSESWLDTECKPETNGTKLKFKVMYFKTPTGKKQFPCEICHNTFTREGSLKIHLRTHTGEKPFGCEICDFKSSRKEYIKKHMLMHTGEKRFSCEMCDYKCFQKTHLQLHLATHTGVKPFECEICDYKCAAKASLKVHLKVHTGEKPFTCDICDSKFAHRAHFKAHLRLHTGEKPFKCEICDFRCVRKLQLKSHSVVHSDSKAFNCGICYRKFSMKARLKLHLRIHTGEKPFECEICNRRFTHKESLKAHGATHSSEKGFSYHASIPFQIKTEEEMEIKLEDLHHSIDIKEETSVVEHQQEIEFKPQTSNTQLACKISPSKSHTVEKPFACVLCDYKCAQRAQLTRHFRTHTGEKPFTCEICDNKFSRKSTLQIHSKIHKGEKPFACELCDYKCTQKGNFKTHLRTHTGEKPFACEFCDYKCTHKGSLKDHLRTHTSDEKPYSCEHCDYKYAHKSSFQNHLRTHTAEKLFKCGTCEYESAKKADLTVHLRTHTGEKPFTCEICGCHFAHKRSLTIHLRTHTGEKPFKCEICGYQSAQKGDLTIHLRIHTGEKPYTCDICGYKCAHKGSLTSHLRTHTGEKLFKCEMCSYESAKKGDLTIHVRTHTGEKPFACEMCDYKCAHKVSLRIHLISHTGKKPFKCGICDYGSALKGDLTIHLRSHTGEKPYTCEFCCLKFARKRELTVHLNTHTALQEAVSVSTTGI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-