Cnig013104.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis nigra
Gene Symbol
-
Assembly
GCA_958510845.1
Location
OY294029.1:47377524-47391455[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.00012 0.0063 17.7 0.8 1 23 79 101 79 101 0.98
2 29 5.2e-05 0.0027 18.9 2.7 1 23 107 129 107 129 0.98
3 29 0.01 0.55 11.6 5.6 2 23 136 157 135 157 0.97
4 29 0.00098 0.051 14.9 2.2 1 23 163 185 163 185 0.98
5 29 0.0013 0.068 14.5 5.4 1 23 191 213 191 213 0.99
6 29 0.0013 0.069 14.5 3.5 1 23 219 241 219 241 0.98
7 29 0.0067 0.35 12.2 0.5 1 23 354 376 354 376 0.97
8 29 3.6e-06 0.00019 22.5 3.2 1 23 382 404 382 404 0.99
9 29 0.0012 0.063 14.6 1.7 1 23 410 433 410 433 0.97
10 29 9.7e-05 0.005 18.0 0.7 1 23 439 461 439 461 0.98
11 29 4.4e-05 0.0023 19.1 2.5 1 23 467 489 467 489 0.98
12 29 0.00041 0.022 16.1 3.8 1 23 495 517 495 517 0.97
13 29 4.2 2.2e+02 3.4 0.4 1 13 523 535 523 537 0.89
14 29 5.2e-06 0.00027 22.0 0.3 1 23 640 662 640 662 0.98
15 29 0.0002 0.011 17.0 2.0 1 23 668 690 668 690 0.98
16 29 0.00049 0.026 15.8 0.4 1 23 696 718 696 718 0.94
17 29 0.001 0.052 14.8 1.3 1 20 724 743 724 746 0.94
18 29 0.00012 0.0062 17.7 2.0 1 23 752 774 752 774 0.99
19 29 0.00013 0.0069 17.6 0.8 1 23 780 802 780 802 0.98
20 29 0.00019 0.01 17.1 1.6 1 23 808 830 808 830 0.98
21 29 1.2e-05 0.00063 20.9 1.4 1 23 836 858 836 858 0.99
22 29 0.00013 0.007 17.6 3.5 1 23 864 886 864 886 0.98
23 29 0.0012 0.062 14.6 1.6 1 23 892 914 892 914 0.98
24 29 0.0024 0.13 13.7 3.8 1 23 920 942 920 942 0.98
25 29 0.00034 0.018 16.3 0.4 1 23 948 970 948 970 0.99
26 29 4.3e-06 0.00022 22.3 1.6 1 23 976 998 976 998 0.98
27 29 0.003 0.16 13.3 0.8 1 23 1004 1026 1004 1026 0.93
28 29 0.001 0.053 14.8 1.3 1 23 1032 1054 1032 1054 0.97
29 29 0.00089 0.047 15.0 2.2 1 23 1060 1082 1060 1082 0.97

Sequence Information

Coding Sequence
ATGTTGCTTAAATCTTGTACGAAGCCTGAAACTGCCATTACTAATATTGATATGAATATGGAAATGGTATTTGTTCCTGAATTGGATAATGCTGGCAtcgaaattaaaactgaaaaagtggAAGAAATTGGTGTCAAGCTGGAAGACTTGCATCATTCGatcgacattaaagaagaaaccTCGTGTACCTATTTTCAACCGGATGAAGGTTTCAAAACACAAATATGCAAACAATTCGTATGTGGGGTATGTAACGTAATATTTACCAATAAATTTCACCTAAGTGAGCATATAAAAGTTCATACGGGGCAGAAACCGTTTGAATGTCAGTTATGCGATTATAAATCATCTcgtaaggaaaatttaaaaaggcatTCACGAACTCATACCCACCAAAAACAGCTTGAATGTGAAATCTGTAACCTGAAATGTAAGCATAATACAGCTTTAAATCATCATTACCGAATCCATGCAGCTCAGAAGCTGTTCGAGTGTAAATTTTGCGTTTACAAATCTTCTCGAAAAGAAGATCTTAAGCTTCACTTACGAACCCATTTCGGTGAAAAACCGTTCCGATGTACAATATGCGATTTCAGATGTTCTTATAAACAATCTCTGAAAAGTCATCAACTAACTCATACTGGTGAGAAGCCCTTCGAGTGTTACAGTTGTGGTTACAAATGTACTCAAAAAGGAACCTTGAAAGGTCATTTACGAACTCACACCCAGGAGAAATCTTACGAGTCAAAAGTCGATATGGATAAGATGATATCTTCAGAAGAAGTAGACGGTAGTAGCAAAGAAATACAAATAGAAGATATAAAACTGGAAGATCTTcatcattccatcgacattaaagaagaaTCTTCAATTTCCGAATATCAACTGGAGCAAGAATGCAAGATGCGATATGTGTGCGAAACtggtaacaaaataaaaatcgaaGAGATGAAAGATGAGGATACCAAGCATAATTTGGACCTTCGCAATTTCGTTGGCATTAAAGAAGAGACTTCCATTGGAGAATCTCAACTTGGAGAACACACAAAACGGCGGCGGTTTTCCTGTTCACTTTGTGCCAATACATTTGCGTTCCCAGTTTCCTTGAGGAAGCATTTAAAGTTACACACTGGGGAGAAGCCATTTACATGTGAAGTTTGCGGTTATAAATGTTCTCGAAAAGACAATTTGGATCGCCATTTACGTACGCacacgggggaaaaaccgtttgagtgtaaaaTTTGCGACTTTAAGTGTGTGAACTCACCGACCTTGAAAAAGCACGTAATGGTAACTCATACTGGTGAGCAACCATTTTCATGTGAAATTTGCGGTTACAAAAGTACTCTAAAAGAAAGCTTGAAAATTCATTTGCGCACtcacaccggggaaaaaccgtttaatTGTGAAATATGTGGGTTCAAATGTTCGCAGTCGTCTTCGTTGAAAAACCATTTGATAACTCACACGGGGGAAAAACCATTCGAGtgcaaaatgtgcaattttaaatgttcacaaTCATCGACGTTGAAAAATCACATGGTAATCCATACTGGTGAAAAACCTTTTTCGTGTACGGTTTGTTACATGAAATTTTCACGggaAGAAATGGAATACGAGGACGTCACGGTTGAACAATTACATTATTCCGTTGATACTGAAGAcgaaattgcaattaaaaaatgcCAAGAGGAAGAAGAAAGCAGACAACCAATTGCTGACAGGCAATTAGAATGTGGGGAAAAACAAACTTCTGAGAGAAATTCAAATGACTGTCCGGAAGTTAAGACCGAAGAAGACGACATGGAATTCAAGTTGGAAGGTTTACATCATTCCATCGACATCAAAGAAGAGGctccaaattttgaattacctCGAAAGGTGAAAAGATACAGATCGAAAACAAACAAACCACCGTTTGTTTGTCCGATTTGTGGGGCCAAATGCGCACAGAAAGGaactttaaaaatacatataaggACCCATAGCGGTTTGAAGCCGTTCTCGTGTGAAATATGCAGCTATAAATGTGCACGTAAAGATGCTTTGAAAAATCATTTGCTAACCCACACCAGAGAGAAACGATTTCTGTGTGagatttgtgattataaatgtgcacGTAATGGAGATTTAAAGATTCATATGGGTATTCACAGTACCGACAAGCCTTTCAtgtgtgaaatttgtgattacaaatgTTCTCGTAAAGATGCTCTAAAGAGTCACTTATGGATACATACTCGGGAGAAGCCGTTCACATGTGAATTTTGTGATATGCAATGTGCAACCAAAGGtagcttaaaaattcacatAAGAACTCATACAGGCGAGAAGCCGTAtacttgtgaaatttgtgaatATAAGTCTGCACGTAAGGGAACCctaaaaaagcatttaaaaattcacactggcgaaaaaccgtatATGTGTGAAATTTGTAACTATAAATGTGGATCCAAAGATGCCTTAAAAACCCATTTGAGAATTCATACTGGGGAGAAACCGTTCACCTgcgaaatttgtgattataaatctgCACGTAAAGGAACTTTGAAAAAGCATTTAAGAACTCACACTGGAGAAAAACCATTTatgtgtgaaatttgtgactacaAATGTTCACACAGAGGTAGCTTAAGTATCCATATAAGAACACATACAGGGGAGAAACCGTTTTCCTGCGAACTTTGTGAATACAGATGTGCACAAAAGGCAGacttaaaaattcacaaacgAGTTCACACCGGGGAGAAGCCGTTTTCATGTGAAATTTGCGAATACAGATGTGCACATAAAGGTAGCTTAAAGATTCATTACAGGCTCcacactggcgagaaaccattcaCCTGTGATTTTTGTGACTTGAAATACGCAGATAAAGGAGTTTTAAAGATTCACTTAAGAACCCACACCGGTGAGAAGCCGTTTACATGTGAAATTTGTCAATATAAGTTTGCACAACAAGgacatttaaaaatacatttaaggattcatactggcgagaagccGTTTAGTTGTGAAGTTTGTGACTATAAGTGTGCACGTAAGGGGGACTTAAAAATTCACTCGGTAATTCACAGCGGTGAGAAGGCGTTTGCGTGTGAATTTTGTGACTATAGGTGTGCACGTAAAAGAGATTTAAAAGTTCACTTGATCGTTCACACTGGTGAGAAAGCCTTTGcttgtgaaatttgtaattataaaactGCACATAAAGGTAgcttaaaatatcatttaaaaactCACACTCGCTTATCGAAACTTGAATTGAAACAGGAATAA
Protein Sequence
MLLKSCTKPETAITNIDMNMEMVFVPELDNAGIEIKTEKVEEIGVKLEDLHHSIDIKEETSCTYFQPDEGFKTQICKQFVCGVCNVIFTNKFHLSEHIKVHTGQKPFECQLCDYKSSRKENLKRHSRTHTHQKQLECEICNLKCKHNTALNHHYRIHAAQKLFECKFCVYKSSRKEDLKLHLRTHFGEKPFRCTICDFRCSYKQSLKSHQLTHTGEKPFECYSCGYKCTQKGTLKGHLRTHTQEKSYESKVDMDKMISSEEVDGSSKEIQIEDIKLEDLHHSIDIKEESSISEYQLEQECKMRYVCETGNKIKIEEMKDEDTKHNLDLRNFVGIKEETSIGESQLGEHTKRRRFSCSLCANTFAFPVSLRKHLKLHTGEKPFTCEVCGYKCSRKDNLDRHLRTHTGEKPFECKICDFKCVNSPTLKKHVMVTHTGEQPFSCEICGYKSTLKESLKIHLRTHTGEKPFNCEICGFKCSQSSSLKNHLITHTGEKPFECKMCNFKCSQSSTLKNHMVIHTGEKPFSCTVCYMKFSREEMEYEDVTVEQLHYSVDTEDEIAIKKCQEEEESRQPIADRQLECGEKQTSERNSNDCPEVKTEEDDMEFKLEGLHHSIDIKEEAPNFELPRKVKRYRSKTNKPPFVCPICGAKCAQKGTLKIHIRTHSGLKPFSCEICSYKCARKDALKNHLLTHTREKRFLCEICDYKCARNGDLKIHMGIHSTDKPFMCEICDYKCSRKDALKSHLWIHTREKPFTCEFCDMQCATKGSLKIHIRTHTGEKPYTCEICEYKSARKGTLKKHLKIHTGEKPYMCEICNYKCGSKDALKTHLRIHTGEKPFTCEICDYKSARKGTLKKHLRTHTGEKPFMCEICDYKCSHRGSLSIHIRTHTGEKPFSCELCEYRCAQKADLKIHKRVHTGEKPFSCEICEYRCAHKGSLKIHYRLHTGEKPFTCDFCDLKYADKGVLKIHLRTHTGEKPFTCEICQYKFAQQGHLKIHLRIHTGEKPFSCEVCDYKCARKGDLKIHSVIHSGEKAFACEFCDYRCARKRDLKVHLIVHTGEKAFACEICNYKTAHKGSLKYHLKTHTRLSKLELKQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-