Cnig013412.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis nigra
Gene Symbol
-
Assembly
GCA_958510845.1
Location
OY294029.1:49764551-49769840[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 0.0096 0.5 11.8 1.9 3 23 46 66 44 66 0.96
2 36 0.00025 0.013 16.7 0.6 1 23 72 94 72 94 0.96
3 36 0.00012 0.0061 17.8 1.4 1 23 100 122 100 122 0.99
4 36 0.0034 0.18 13.2 1.9 1 23 128 150 128 150 0.97
5 36 0.0004 0.021 16.1 3.5 1 23 156 178 156 178 0.98
6 36 0.00012 0.006 17.8 1.6 1 23 184 206 184 206 0.98
7 36 0.00013 0.0069 17.6 0.8 1 23 212 234 212 234 0.98
8 36 0.045 2.3 9.7 2.5 1 23 240 262 240 262 0.97
9 36 1.5e-05 0.0008 20.6 1.0 1 23 283 305 283 305 0.98
10 36 0.00027 0.014 16.6 0.5 1 23 311 333 311 333 0.98
11 36 0.00014 0.0074 17.5 1.0 1 23 339 361 339 361 0.98
12 36 0.0096 0.5 11.7 1.0 3 23 369 389 367 389 0.98
13 36 0.0013 0.068 14.5 1.5 1 23 395 417 395 417 0.98
14 36 0.0092 0.48 11.8 1.8 3 23 425 445 423 445 0.97
15 36 0.074 3.9 9.0 6.4 1 23 462 484 462 484 0.98
16 36 0.00023 0.012 16.9 3.1 1 23 490 512 490 512 0.97
17 36 0.00017 0.0088 17.3 6.2 1 23 518 540 518 540 0.98
18 36 4.4e-05 0.0023 19.1 1.6 1 23 546 568 546 568 0.97
19 36 0.00081 0.042 15.1 1.1 3 23 576 596 574 596 0.98
20 36 0.00095 0.05 14.9 5.4 1 23 602 624 602 624 0.98
21 36 0.0016 0.086 14.2 0.6 1 23 630 652 630 652 0.94
22 36 0.0026 0.14 13.5 4.9 1 23 658 680 658 680 0.98
23 36 0.0018 0.094 14.0 1.8 1 23 686 708 686 708 0.97
24 36 0.0072 0.38 12.1 2.3 1 23 714 736 714 736 0.95
25 36 0.00067 0.035 15.4 0.1 1 23 759 781 759 781 0.98
26 36 0.0041 0.21 12.9 4.5 1 23 787 809 787 809 0.98
27 36 0.00092 0.048 15.0 4.7 1 23 815 837 815 837 0.97
28 36 0.00029 0.015 16.5 2.0 1 23 843 865 843 865 0.98
29 36 1.6e-05 0.00082 20.5 3.2 1 23 871 893 871 893 0.99
30 36 4.3e-06 0.00022 22.3 1.9 1 23 899 921 899 921 0.99
31 36 0.019 1 10.8 2.0 1 23 927 949 927 949 0.97
32 36 0.00038 0.02 16.1 2.2 1 23 955 977 955 977 0.98
33 36 1.7e-06 9.1e-05 23.5 1.2 1 23 983 1005 983 1005 0.99
34 36 0.013 0.7 11.3 2.5 3 23 1013 1033 1011 1033 0.97
35 36 0.018 0.93 10.9 0.9 1 23 1039 1061 1039 1061 0.98
36 36 0.00015 0.0077 17.5 0.7 1 23 1102 1124 1102 1124 0.97

Sequence Information

Coding Sequence
ATGAAGATAGAGGAACAAATGGAAATCAAGCTGGAAGAGCTGCACCACACCTACGATATCAAAGAAGAGAAGTCGACTGCAGTGTATCTACCCGATGAAGAATGCAAATCGGAAGAAAATGACGCAACGCTTGCGTGCGAGCTGTGCGAATACAAATGTAAACTTAAACGAAACTTAAAAGCTCACTTATTGACTCATTCTACCGTAAAACCGTTTACTTGCGCTGTTTGCGGTTATAATTGTGTACGCAAAGGAGATTTGAAGAGACATTTGGCTGGTCATAGCAACGTGAAATCGTTTGAATGTAAGATTTGCGATTATCGGAGTGCACATCGGGGAAGTTTAATATcccatttaagaactcatacagGCGAGAAGCCGTTTGCTTGCAAATTTTGTGATTACAAATGTACCCTTGGCGGAAATCTAAAAATTCATATGAGGATTCATACGGGAGAAAAACCGTATTCGTGTGGAATTTGCAATTATAGATGTGCGCACAAGGGAAGCTTAAAATCGCATTTAAGAATacatacgggggaaaaaccgtatgcATGCGAAATTTGCGATTACAAATGTACGGAGAGAGGAAGTTTAAAAAAGCATTTACGGATCCACACAGGCGAGAAGCCGTACAACTGTGAAATATGCGATTATAAAACTTCAGAAAAGGGAAGTTTAAAGTTGCATTTAAGGACTCATAcaggtgagaaaccatttgctTGTGAGTTTTGCGATTACAAGAGCGCACATAAGAGAAGTgtgaaaattcatttaaaaactcaCTCGTTCGATCAAGAGTTTATCGAGAAGAGAGTTTCCAGCCCACTATCGAACGCGAAAGTGTTTTCGTGTGATATCTGCGGCTACATCTGTGCCAGTAGGGGTAATTTAAGAAACCATTTGAGAAgtcatacgggcgagaaaccgtttgagtgttcAATTTGTGACTTCAAGACTACACTGGCGGGAAATCTTAAAATGCATTTAAGAACGCATACGGGTGAAAAACCGTTCATGTGCgcaatttgtgattataaatctgCGCATAAGGGAAGTTTGAAAGCTCACTTACGAACGCacacgggggaaaaaccgtttggaTGCCAAATCTGTGATTATAGGACTGCATATAGAGTATGTTTGAAAGCTCACTTAAGAGTACATTCCGGCGAGAAGCCGTATGTATGTGATATTTGCGACTATAGATGTATAGAAAAGGGCAGTTTAAAATCCCATTTATTCACCCATACTGGTGAGAAGCCGTTCGGGTGTGCAATGTGCGACTACAAATGTGCACGTAAGGgagatttaaaaattcattttaaaactcaTCGGAATTCAAAACAGGCAATTTTGGTATTCGATCCGAACGTTAAGCAGTTTAAATGTAAactttgcgattataaatgcgAACACATGGCCGGCTTACGAAAGCACTTCAGAagtcataccggggaaaaaccgtttgcttGTCATTTATGCGACTACCGGTGTACGCTTAGTGGAAATTTACGCATCCACATGAGAgttcataccggggaaaaaccatTTTCATGCCAAATTTGCGATTACCGATGTTCACACAAAGGAAGTTTGAAAACCCACTTAAGAACGCacacgggggaaaaaccgttcgcCTGTAATATCTGCGATTACAAATGCACCGAGAAGGGAAGTTTGCAGAAACATATCAGAATtcacaccggcgaaaaaccgtacgGTTGCGACATATGCAACTATAAATGTACAGAGAAGGGAAGTTTAAAAGCACATTTAAGAATacacaccggggaaaaaccgtatatGTGTGAGTTTTGTGATTACAAATGCGCACACAAGGGAAGTTTGAAGTCTCATTTGAGAACTCACACCGGCGAGAGACCGTTCTCCTGTGAAATTTGCAATTACAAATGTGCGCGTAAGGCAGATTTGAAAATCCATGCGGTTATtcacaccggggaaaaaccgtatatGTGCGCACATTGCGACTTTAAATGTGCGTATAAGGCCAGCTTGAAATCGCATTTACGGACCCATACGGGTGAGAAGCCCTTCGCCTGTGAATTTTGCGATTACAGATGTTCCGAGAAGGGAGGTTTGAAGTCACATGTGAGGACCCATACGGACGAGAAGCCGTATCTCTGTGAATTTTGTGACTACAAGTGTGCACGTAAAGGCGACTTGAAGGTTCACTCGAAAATGCATATTGGCGACAGTCCGTTCAAGTTGGAAGATATTCCAGAAGACTTAGGGGAATCACCGGAAAAGCAGTTTTCATGCGATATTTGTGATTACAAGACGGCACAGCGAGCGAGTTTGGTAAGTCACGTCAGAATCCATacaggggaaaaaccgttttcCTGTGAATTCTGCGACTACAAATGTGCGCATAGGGGAAGTTTAAAAACCCACGTAAGGAtccatacgggtgagaaaccgttCGCCTGCAGTATGTGCGACTACAAATGCTCTCATAGGGGTAGTCTGAAAACTCACTTGAGAATACATACAGGGGAAAAACCGTACGCCTGCGAAATGTGTGATTACAAATGTACAGAACGAGGAAGTTTAAAGAAACATTTAAGAATacacaccggggaaaaaccgtttcaATGTGAGATATGCGACTACAAATGTACTGAGAAAGGAAGCCTGAAGTCGCATATGCGGACCCACACTGGGGAAAAACCCTACACCTGTGGAATTTGTGATTACAAGTTCACCCAGAAAGGATATTTCAAAATTCATCTGAGGACCCACACCGGGGAGAAGCCGTTCGCATGTAATCTGTGTGAATATAAAAGTGCACACAAAGGCAGCTTGAAATCCCATTTCAGAATTCACACAGGTGAGAAGCCGTTTACATGTgaagtttgcgattataaatgtgcacgCAAGGGGGACTTGAAGATTCACTCTAAAACCCACACTGGTGAGAAGCCGTATACGTGCGACATCTGCGGTTATAAATTTGCTCAAaaaggatattttaagattcaCTTAAGGACCCATACAGGTGAGAAGCCGTTCGGCTGCTATCTTTGCGACTACAAATGCGCATATAAGGGTAGTTTGAGAACACATCTAAAAACacatacgggggaaaaaccgtacaGTTGTGATTTTTGCGAGTATAAAAGTACATTTGAGGGCAACTTAAAAAGTCATTTAATCTCTCATCAAAgtgaaaaattgtttaaatctgAAGATCTCCATCATGCAATCGACATTAAGGAAGAAAATGTATACTTCGAGTATGAATCGGACACCTACTCCAAACCTCCGACTGTCTGGAAACCATTCGCATGTGacgtttgcgattataaatgcgCACGTAAAGGAGATTTGAAAGTGCATTTGAAAATTCATAGCGGCGTGAAGCCGTCGAGGAAGAATCGCTGGGAAAATTTGGTGTCTAGTGAAGGGAATTCTGAGGAAATGTATTCTTTGGAGAGTCTCGGTAGATCAATGCAGATGAGAGAGAACGTATCGAGTTTGTCTAAGGGATTCGAGTGGTCCATCACAGCTACACTCACCCGATTAAGCTGTTTGGCCCAGGATTTAGGGACTTCACGCGTTTTCCTGATTGTTTTGATCGATCTGACCGTATTGCGGACGAGACGCCATTTACCCGCACACTTGACCTTGGAACGCCATTTCCCATCACCGGTAAAAATATCCCCAACACAAGAGAGTTTTAAGTCCTGA
Protein Sequence
MKIEEQMEIKLEELHHTYDIKEEKSTAVYLPDEECKSEENDATLACELCEYKCKLKRNLKAHLLTHSTVKPFTCAVCGYNCVRKGDLKRHLAGHSNVKSFECKICDYRSAHRGSLISHLRTHTGEKPFACKFCDYKCTLGGNLKIHMRIHTGEKPYSCGICNYRCAHKGSLKSHLRIHTGEKPYACEICDYKCTERGSLKKHLRIHTGEKPYNCEICDYKTSEKGSLKLHLRTHTGEKPFACEFCDYKSAHKRSVKIHLKTHSFDQEFIEKRVSSPLSNAKVFSCDICGYICASRGNLRNHLRSHTGEKPFECSICDFKTTLAGNLKMHLRTHTGEKPFMCAICDYKSAHKGSLKAHLRTHTGEKPFGCQICDYRTAYRVCLKAHLRVHSGEKPYVCDICDYRCIEKGSLKSHLFTHTGEKPFGCAMCDYKCARKGDLKIHFKTHRNSKQAILVFDPNVKQFKCKLCDYKCEHMAGLRKHFRSHTGEKPFACHLCDYRCTLSGNLRIHMRVHTGEKPFSCQICDYRCSHKGSLKTHLRTHTGEKPFACNICDYKCTEKGSLQKHIRIHTGEKPYGCDICNYKCTEKGSLKAHLRIHTGEKPYMCEFCDYKCAHKGSLKSHLRTHTGERPFSCEICNYKCARKADLKIHAVIHTGEKPYMCAHCDFKCAYKASLKSHLRTHTGEKPFACEFCDYRCSEKGGLKSHVRTHTDEKPYLCEFCDYKCARKGDLKVHSKMHIGDSPFKLEDIPEDLGESPEKQFSCDICDYKTAQRASLVSHVRIHTGEKPFSCEFCDYKCAHRGSLKTHVRIHTGEKPFACSMCDYKCSHRGSLKTHLRIHTGEKPYACEMCDYKCTERGSLKKHLRIHTGEKPFQCEICDYKCTEKGSLKSHMRTHTGEKPYTCGICDYKFTQKGYFKIHLRTHTGEKPFACNLCEYKSAHKGSLKSHFRIHTGEKPFTCEVCDYKCARKGDLKIHSKTHTGEKPYTCDICGYKFAQKGYFKIHLRTHTGEKPFGCYLCDYKCAYKGSLRTHLKTHTGEKPYSCDFCEYKSTFEGNLKSHLISHQSEKLFKSEDLHHAIDIKEENVYFEYESDTYSKPPTVWKPFACDVCDYKCARKGDLKVHLKIHSGVKPSRKNRWENLVSSEGNSEEMYSLESLGRSMQMRENVSSLSKGFEWSITATLTRLSCLAQDLGTSRVFLIVLIDLTVLRTRRHLPAHLTLERHFPSPVKISPTQESFKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-