Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0013 5.5 7.9 1.7 19 40 105 123 100 126 0.75

2 9 0.04 1.6e+02 3.2 0.6 19 38 133 153 128 155 0.82

3 9 0.012 48 4.9 0.5 18 40 160 179 150 182 0.91

4 9 7.5e-05 0.31 11.9 0.6 5 41 176 208 172 210 0.84

5 9 0.0069 28 5.7 7.3 6 41 205 237 204 240 0.88

6 9 0.0011 4.5 8.2 1.1 17 40 244 264 237 267 0.83

7 9 0.007 29 5.6 0.4 19 33 274 288 269 294 0.86

8 9 0.026 1e+02 3.8 0.8 6 41 290 321 285 323 0.72

9 9 0.0066 27 5.7 0.1 19 30 330 347 325 353 0.74

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0013	5.5	7.9	1.7	19	40	105	123	100	126	0.75
2	9	0.04	1.6e+02	3.2	0.6	19	38	133	153	128	155	0.82
3	9	0.012	48	4.9	0.5	18	40	160	179	150	182	0.91
4	9	7.5e-05	0.31	11.9	0.6	5	41	176	208	172	210	0.84
5	9	0.0069	28	5.7	7.3	6	41	205	237	204	240	0.88
6	9	0.0011	4.5	8.2	1.1	17	40	244	264	237	267	0.83
7	9	0.007	29	5.6	0.4	19	33	274	288	269	294	0.86
8	9	0.026	1e+02	3.8	0.8	6	41	290	321	285	323	0.72
9	9	0.0066	27	5.7	0.1	19	30	330	347	325	353	0.74

Coding Sequence: ATGAAAATTGCTATTGGTTTAGAAAGTTTGGAAAACAATTATGAAGTTTCAGACACTCCTTGTAATTCAATTGggatcttgaaaattaaaacggAACAAGTAGAAGACTGCGACATCAAATTAGAAAGTCTAcatcattccatcgacattAAAGATGAAGTTGCCGATGTGGCTAAAGAAAGCAAACCACTTCTTTGTGAGGTAAACAAGAGCACAGAATTGtttgaaagtcaaatttgtAACCTAAAATGTATGCAACAGGAAACTTTAAATATTCCCGTAAGAACTAATTCGGAGGTTAAACCCTTCGCATGTGCAATTTGTCACCGAAAGTTTACTCGTAAGGAACATTTAAAAACCCATTTGAGAAATCACAGTGGCAACAAACCTTTTGCATGTGAAATTTGTCAACAGAAATTTTCGACTAAAGGGCACCTGACGGttcatttaagaattcataCGGGGGCCAAACCTTTTGCATGTGAAATTTGTTACCAAAAGTTTGCTCGTACAGATTATTTAAAACGTCATTTAAAACTTCACACTGACGAAGAACTTTTTGCCTGCAAAATTTGTGACCAAAAGTTCGCTAGAACAGATTTCTTAAAACGGCATTTAAGGAAACATACTAGTGGCGAAAAATGCTTtgcatgtgaaatttgtgaacGAAAGTTTTCGCATAAAAGAAACATGAAATCTCATTTAAGCACTCATACGGGAGACAAACCTTTCCGATGTGAAATTTGTGAGCAAAAGTTTGcccgtaaaaaatatttaagccGTCATTTACTAAGGCATAGTGGCGAAAGACCTTTTGCTTGTGAAATTTGTGGACagaaattttcaagcaaaagcagcgtgaaaattcatttaagaattcacaCAGGGGATAAACCATTTGCATGTGAAATTTGCAACCAAAGGTTTGCTCGAACAGATTATTTGAACCTTCATTTAAGACGACATAGTGGCGGAAAACCTTTTGCATGTGGAATTTGTGAAGAAAAATTTTCGTCTAAAAGCTacgtaaaaattcatttaaaaactcatacGCTGGACAAACCTTTGTAG
Protein Sequence: MKIAIGLESLENNYEVSDTPCNSIGILKIKTEQVEDCDIKLESLHHSIDIKDEVADVAKESKPLLCEVNKSTELFESQICNLKCMQQETLNIPVRTNSEVKPFACAICHRKFTRKEHLKTHLRNHSGNKPFACEICQQKFSTKGHLTVHLRIHTGAKPFACEICYQKFARTDYLKRHLKLHTDEELFACKICDQKFARTDFLKRHLRKHTSGEKCFACEICERKFSHKRNMKSHLSTHTGDKPFRCEICEQKFARKKYLSRHLLRHSGERPFACEICGQKFSSKSSVKIHLRIHTGDKPFACEICNQRFARTDYLNLHLRRHSGGKPFACGICEEKFSSKSYVKIHLKTHTLDKPL

Sequence clustering based on sequence similarity using MMseqs2