Cnig021192.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- SMARCC2
- Assembly
- GCA_958510845.1
- Location
- OY294031.1:37845416-37849388[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5 1.1e+04 -2.5 0.0 32 43 199 210 197 212 0.85 2 2 1.1e-14 1.6e-11 44.9 0.1 3 44 594 635 592 637 0.95
Sequence Information
- Coding Sequence
- atgatGGCTTTCGGCCCCAAAAAAGACGGAGGTCCTAATACCAAATACTTTGAGGCACCCGAAACGCTCACTTCGTTGGAAGTTGTGCGGCAGTGGCTgcagaaaaatggaaaaaagTATGTACAATCGGATCCTCCTACTAACAAAAGCTTGGCTTCGCTCATTGTTCAATTACTACAATTTCAAGAAGACAATTTGGgcaaaaatacaacaaaaccTACAACAACCCGAATACCGgtGAAGTATTTCATGGATTACAAACCGGGTGGTGCACTGTGTCAGATGCTTCTCACAGCGTATCGTTTTAAATGTGATCAGAATTGGAGAAAATTTGACATGCAGATTGGAAAGAGCCCAGCAAGATTGGATCGACTCGTGGATATGTTTATGGCCATGGAAAAGGCTTTAATTCAAAACAAGTTATATTCTCTCCCGATTGCTTACATTAGACCAGAGGTGGATAAGAGTTTGGCGGCAAAATTGAAGGACATTTTGAGGAAGAGAAATGGACAAGTTGTGGACAACGAGGAGGTGGCCACGCACATTTTGTTTCCACACACCGATCCTCTAGAGGAAGAATACGCTAGACCAGGTTTGAGACGGGACAAAATGATCATGATGCATTGGTATTATTTTCCTGACTCTTACGATACTTGGGTAGGGATGGAAGGAGCTCTCGAAGGACTGCCTGCCGACGACGCTTCTCCTCACTCCGGTCCGTGGAGAGTTTCATCTACTTGGCTGCTCGACTCCGAGCAGTATAACGAGTGGATGACCGAGGAAGATTACGAAGTCGACGAAGAGGGGCAAAAAAAGATTCATCGCATGAGAATGTCCGTCGAAGACCTCATGAATCCATCGGGGGATATGGACCGAAACAAgAAAAAACAAAAGAGGAAGCGTTCTCCATCTCCAATACTGAAGGGTGGCAAACGCAAAAGCGGCAGGAGTCCAGCTATCGGCAAGAAAGCGCGACTCGACGAAAGCGAATTGGAAGATTTAACTAAAGACATGGAAGAACCAATTCCGGAACCTAATATCGTGGAAGTTAACCCGACAGCTGCCGCTCAAATAGGCAAAAAAGATCACGAATTGCAACCACTTAAAGGTGGTTCCATTACAGATTTAGACGAATCGGAAGATAGAGGAGAAGACTCTCAAACTGGAAAGAACAGCGATAGCAATACTCAAGACAAAGAGGATACTCAGGAAGATAATGTCACAGAACAAACTCATCACATAATAATTCCATCGTATTCCTCTTGGTTCGATTATAATTCAATTCACGATTTAGAAAAACGCGCACTTCCGGAATTTTTTAACGGACGCAACAAATCAAAGACGCCGGAAATTTACATGGCTTACAGAAATTTCATGATCGATACTTACCGCTTAAATCCCACCGAGTATATTACCAGCACGGCATGTCGTAGAAATTTAGCAGGAGATGTATGTGCAATTATGCGGGTGCACGCCTTTCTTGAACAATGGGGACTCATCAACTATCAAGTTGATACCGATTCGAGACCCACGGTAATGGGACCACCACCGACATCCCACTTTCACATTTTATCCGATACTCCCTCTGGCTTGCAACCCGTTAATCCTCCAAAAACTCCACAGCCTAGTGCAGCAAAAACTTTACTAGATCTTGACAGAACTCAGGAGTTCAAGAAGACAGATGGATCTGATCTAATGacaaattttggtttaaagTTGGATCAATATGCTAAGAAACCTGTAGTTATGAGGAACAAAACTGCAGCTAACCTTACACGTGATTGGACGGAACAGGAGACGTTGCTTCTTTTGGAAGGTCTTGAAATGTACAAAGACGATTGGAATAAAGTTTGTGAGCATGTCGGTTCGCGAACGCAAGACGAATgcattttacattttcttcgACTACCGATCGAAGATCCTTATTTGGAAGACCCAGAAGCTGGTGGCGCTTTAGGCCCCCTGGCGTATCAACCGATCCCTTTCAGTAAAGCCGGTAATCCGATAATGTCGACTGTCGCATTTTTAGCTTCAATTGTTGATCCTCGTGTGGCTGCAGCCGCTGCAAAATCGGCAATGAATGAATTTGCCAGTATAAAAGACGAAGTTCCTGCGGCGTTGATGGATGCTCATATGAAAAACGTGGAAGCATCTTCGACAGATGGAAAGTTTGATCCCGCTGCCGGACTTGCATTAAGTGGAATTGCTGGAACTCTACCcgagaaagaagaagaagacaaaGTGAAAAAAGAAGTCGAGGTGAAAGAAGATAAAACTTCTAATGGAGAGCAAAAGAAAAATGGTATCGAAGGTGTCGAAGAAAAAATCGACGAAAAACCTGTCGAAACAACTCCCGAAACTGAAAAGGAAGAAAAGATGGATACTTCagaaattaaaactgaaaaagttaTTCGTGACAGTGAAATGCAAAGTGCCGCTGCAGCCGCACTAGCAGCGGCTGCAGTGAAAGCTAAACATTTAGCGGCCGTCGAAGAACGAAAAATTAAATCTCTGGTGGCTTTGTTGGTCGAAACTCAAATGAAAaagcttgaaattaaattgagaCATTTTGAAGAATTAGAGACCACCATGGAGAGAGAAAGGGAAGGTTTGGAGTATCAAAGACAACAGCTTATCACTGAGCGGCAGCAATTTCATCTTGAACAACTTAAAGCTGCAGAATTTAGAGCGAGACAACAGGCACATCAACGAATGCAAGCTGAGCAGGGACAATGGGCTGCACAGCAAAATGCGGTTTCACATCCGACTCCAGCTGGTGACACGGGACCGAGCACTACCCCGACTCCACCTTCTCCTCAAGCTGCTGCCGTTGCCTCACCAGCTGCACCTCATCAACACATGTGA
- Protein Sequence
- MMAFGPKKDGGPNTKYFEAPETLTSLEVVRQWLQKNGKKYVQSDPPTNKSLASLIVQLLQFQEDNLGKNTTKPTTTRIPVKYFMDYKPGGALCQMLLTAYRFKCDQNWRKFDMQIGKSPARLDRLVDMFMAMEKALIQNKLYSLPIAYIRPEVDKSLAAKLKDILRKRNGQVVDNEEVATHILFPHTDPLEEEYARPGLRRDKMIMMHWYYFPDSYDTWVGMEGALEGLPADDASPHSGPWRVSSTWLLDSEQYNEWMTEEDYEVDEEGQKKIHRMRMSVEDLMNPSGDMDRNKKKQKRKRSPSPILKGGKRKSGRSPAIGKKARLDESELEDLTKDMEEPIPEPNIVEVNPTAAAQIGKKDHELQPLKGGSITDLDESEDRGEDSQTGKNSDSNTQDKEDTQEDNVTEQTHHIIIPSYSSWFDYNSIHDLEKRALPEFFNGRNKSKTPEIYMAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDTDSRPTVMGPPPTSHFHILSDTPSGLQPVNPPKTPQPSAAKTLLDLDRTQEFKKTDGSDLMTNFGLKLDQYAKKPVVMRNKTAANLTRDWTEQETLLLLEGLEMYKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEDPEAGGALGPLAYQPIPFSKAGNPIMSTVAFLASIVDPRVAAAAAKSAMNEFASIKDEVPAALMDAHMKNVEASSTDGKFDPAAGLALSGIAGTLPEKEEEDKVKKEVEVKEDKTSNGEQKKNGIEGVEEKIDEKPVETTPETEKEEKMDTSEIKTEKVIRDSEMQSAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHQRMQAEQGQWAAQQNAVSHPTPAGDTGPSTTPTPPSPQAAAVASPAAPHQHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00399040;
- 90% Identity
- iTF_01293593;
- 80% Identity
- -