Cnig003075.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294028.1:35758452-35760377[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.3e-11 5.3e-08 33.3 0.0 1 44 15 58 15 59 0.95
Sequence Information
- Coding Sequence
- ATGCCTAAAGTCAAAAGTCTCAAGCCTTCTTGCCAATTATGGAGTGAGGAAAGCATGCGGGAAGCCATAGAGAATGTGCAAAAAAAGAAGATGGGCTGGAAGCTGGCTTCCAAAACTTTTAATGTACCCAGCACCACTTTACGACGAAGAGTTGGTAGGAATATGGGTTACAAGAAAGGAGACCTTGGAGGATGCCGTCCAACGTTCTCTAAAGAAATCGAGGATGAGATTACTTCTCACATCCCAAACATGGAAACCAGGTTTTTGGGATTGACAACTGCAGATGTTAGGTCACTGGCATACCAAGTTGCGGAACAAAATCACATTCCACATAAATTTAATCGCACTACGGAAAAAGCTGGATGGGCATGGTTACATCAATTCATTAAACGAAATCCAAACATAAGCTTGCGAACGCCAGAAAATACATCTGCTGCTCGGGCTCAGGCATTCAATCAAAGTAATATCGCAGCCTACTTCAAAAAACTCGACGAAGTTTTCACTTTGTATAATTTCTCTCCCGAAAATGTGTATAATATGGACGAAACGGGCTTTTCGACGGTCCAATCGAAACCTGAAAAACTATATGCTACGAAAGGTCGAAAACAAGTTGGCAGTTTGACAAGTGCAGAAAGAGGGAGTCATTATACTGTAGTGTGCGCAGTCAACGCAGTAGGATCATTCGTACCTCCAGCGTTTATCTTTCCTAGGAAAAACATGAAACCAGAACTCATGGATGGCGCCCCCACAAGATCCATTTGTTTTTGCCAGGAGAGTGGATGGATGACATCCGAAGTTATGTTAAAGTGGTTGAACcactttataaaatttgctaaaCCAAGCCTAGAAAACAAGGTGCTACTTTTATTGGATGGTCACGAAAGCCACAAACATCTTAGTGTTTTGCAAAAAGCGAAAGAACACGGAATCGTATTATTCTGCTTCCCGGCCCATTGTACCCACAGATGCCAACCTCTGGACGTCAGATTTTTCGGGCCGCTGGAAACCTATTACAATCAGCAAATTCGTCTTTGGCTCAAGGCCCACCCTGGAAGAGTAGTAACACATCTGCAAGTAGCCCAAATTTTTTGTGAAGCCTATCTCAAAGCTGCACTGCCCTCAACTGCTATCAAATCCTTTCAGAAAACAGGAATTATTCCATATAATCCGGATATATTTGAAGATTGGATTTTTGCGCCAGCCGAAACGACAAATCGACCTTTCCCTGTTGAAGAAAACACGGGCCATCCAGAGAACGATGCCGTTGCTGAAACAGAGGAACACCTGACGCCACCCTTGAGTCTGGCGGTAGATTTTGAAAGACCAGGTACTTCGAAGAAATCTAAGAGCCCTAGACAAGAAGAGACAACTAAGCGCATAATGAACCTTTCTGTCAGTGTCGAGGATATTTCTCCTCTGCCAAAAGCGCCAGCACTCCAGAAGACAACCCGGAAACTAAGGAAAAAGGGCAAATCAGGTGTCATCAATTCTACCCCTGATATTGAGGAAGGAAAGGCTGTAGAAAATACGAAGCAACAGAAGGAAAGAGGAAAATTGGCAAGAGCGGCGAAGAGAAAGTTAAAAGTTATTGAAGAGTCCAATGACGAGGAAGACGGAAACAAAGAAAACATACAAATGAATTTCGAAGATGCTGACGACGAAGACGATGTCCCCTGCTTGTATTGCAATGAACTATTTTCTTGGTCCAAGTCCAAAGAGATCTggcttaaatgtaatttatgtgGGAAGTGGGCTCATGCAGCTTGTGCGGGAAAAGACCCAAAGACCAAAAATTTCACGGGATGGGACAACTTGGCGCTGCCAGCTTGGCGCTGCCAACTTGGCTCCgccaactcggcgccgggacaactcggcgccggcaCAACTCTGCGCCGGGACAACTTGGCGAATTCGGCACCAagttaa
- Protein Sequence
- MPKVKSLKPSCQLWSEESMREAIENVQKKKMGWKLASKTFNVPSTTLRRRVGRNMGYKKGDLGGCRPTFSKEIEDEITSHIPNMETRFLGLTTADVRSLAYQVAEQNHIPHKFNRTTEKAGWAWLHQFIKRNPNISLRTPENTSAARAQAFNQSNIAAYFKKLDEVFTLYNFSPENVYNMDETGFSTVQSKPEKLYATKGRKQVGSLTSAERGSHYTVVCAVNAVGSFVPPAFIFPRKNMKPELMDGAPTRSICFCQESGWMTSEVMLKWLNHFIKFAKPSLENKVLLLLDGHESHKHLSVLQKAKEHGIVLFCFPAHCTHRCQPLDVRFFGPLETYYNQQIRLWLKAHPGRVVTHLQVAQIFCEAYLKAALPSTAIKSFQKTGIIPYNPDIFEDWIFAPAETTNRPFPVEENTGHPENDAVAETEEHLTPPLSLAVDFERPGTSKKSKSPRQEETTKRIMNLSVSVEDISPLPKAPALQKTTRKLRKKGKSGVINSTPDIEEGKAVENTKQQKERGKLARAAKRKLKVIEESNDEEDGNKENIQMNFEDADDEDDVPCLYCNELFSWSKSKEIWLKCNLCGKWAHAACAGKDPKTKNFTGWDNLALPAWRCQLGSANSAPGQLGAGTTLRRDNLANSAPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00269697; iTF_00271037;
- 90% Identity
- iTF_00269697;
- 80% Identity
- -