Cnig003584.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294028.1:43054966-43057023[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.4e-12 2.5e-09 37.5 0.1 3 40 17 54 15 59 0.88
Sequence Information
- Coding Sequence
- ATGGTACGCCATTACAAACGGAAGACAGATAGACAAAAATGGTCGTCAGAAAATATGGAGCGAGCTGTTGAAGCGGTAATTAGTCGCGAAATGGGATTTAAAAAAGCTGCAATCCAATTCCAAGTGCCGTCGACAACCCTTGAAAGGTATGTGAAGAAGAAGAGAGAGAATGCGGAATCAACAATTGATAAAACCTCAGGAAAATATCAATGTGTATTCAACCTTGAACAAGAACGAGAACTTGTAGACTATCTAAAAGATATGCAAAAAAGACTATTCGGATTTAGTGTGAAAGAACTGCGCCGAATGGCGTATCAACTTGCTGAAAAAAACCAGTGTAAacattcttttaataaaaacctGGAAATGGCAGGGGAAGATTGGGCTATTAGCTTCATGAGTCGCCACAGAGACTTAAGTCTGAGGAAGCCTGAAGCTACATCTGGAGCACGGGCTATGGGGTTCAATAAAGTAGTCGTctcgcaattttttaaattactcacTGCAGTTATTGACGAACACAAATTAACTGCAGCGAGAATTTATAACTGTGACGAAACGGGTATTACTGTTGTCCCTaaacagttttcaaaaattattgcaaatagaGGACAGCGTCAAGTTGGCGTTTTGACTTCCGCAGAGAGGGGGAATACGGTAACTGCTGAAATATGCTGCTCAGCAGCTGGATCTTTTATGCCTCCTATGTTAATATTTCCTAGGAAAAGAAAACAACAGGTATTTGAGGTAGGTTTACCTGCAGGAGGTTGGTCTGAAGCAAATGAGTCCGGTTGGATGACAGccgacattttttataaatggttTCAAGCATTTGTTCAATTTTCTAATGCGAAAAAAGAATGCCCTGTGCTACTTCTTCTTGATGGGCATGCATCACACACTAAGAACTTAGCCGTAATTGAACTAGCTCGAGACAAAGGTGTTATTTTGCTATGCTTTCCCCCACACTGCTCCCATCGTCTCCAGCCCCTTGACGTAGCTTTTATGAGGCCATTAAGCTTGTATTATGAAGATGAAGTGAGGAAATGGTTAAGATCAAATCCAGGAAAAGTCGTTACCCTACATCAAATTTCGGCGTTATTTGGACAGGCATTTTTGAGTGCAGCAAATATGAGAACGGGCTTAAAAGGGTTCGAAAAAACTGGCATCTGGCccaataatataaatgttttcaCAGATGCTGACTATTTACCGGCTGCAGTTACTGATATTCCATTAGTCGAAGCACAAGCTACTCGGTTGGAAAGTCAAAATTTGGCcattgttgaaaatattaatgtCATTATTTCGGAAAATGTTACAGAAAATTCTGTAACTGATATTCCCTTGGTCGAAGCACCAACTGCTGGGTTGGAAAATCAAGATTCGGCCATGGTTGAAAATATTCCCGTtgttatttctgaaaatattgtAGAACATTCAGTAATTAACGACAATTCTCCTCCGAGAATTCCTTTAGCATTAATCGAACACACTCGAAACACTCCTGTAGAAAACGAACCTAAGCCTGGCTGTTCATGGATGCCTCATAATAATTATCCTGGAAACCCTCCAATGAATCCcttaaaaacaaatgtattcCAGTATTTGTCCCCGGAACAAATAATGCCAATTCCAAAAGTGAAGGTAGGACAAAAAAGAACAGCAAGAAAGAGGGGCAAAACAGCTATACTAACGGCATCCCCCTATAAGACAGAGCTGGAGGAATCAGCGAAAAAAGTTCAGAAAGCTAACGAAGCAAAGAAAGACAGAGCCAAGCGAAAGTTGGTGCAAAAAGAAACTAACACTAAAGGAAAAGGAAGAGCTGTCGTATccaagaaaatgaagaaaccTGAAAAGAAGAGGAAAAAAACGATTGATGAAGAGGATAGCTCTGAAGAAGAAGACGTCAATTGTTTATATTGTAATGATCAATACTCCAAATCTATCGAAGGATGGTGCTCATGCATGCTTTGTAAAAAATGGGCACATAATTCATGCGCGGGAATCGACAGCGATGACGATGACCAACTCATTTGCGATTTATGTAAGCAGTAA
- Protein Sequence
- MVRHYKRKTDRQKWSSENMERAVEAVISREMGFKKAAIQFQVPSTTLERYVKKKRENAESTIDKTSGKYQCVFNLEQERELVDYLKDMQKRLFGFSVKELRRMAYQLAEKNQCKHSFNKNLEMAGEDWAISFMSRHRDLSLRKPEATSGARAMGFNKVVVSQFFKLLTAVIDEHKLTAARIYNCDETGITVVPKQFSKIIANRGQRQVGVLTSAERGNTVTAEICCSAAGSFMPPMLIFPRKRKQQVFEVGLPAGGWSEANESGWMTADIFYKWFQAFVQFSNAKKECPVLLLLDGHASHTKNLAVIELARDKGVILLCFPPHCSHRLQPLDVAFMRPLSLYYEDEVRKWLRSNPGKVVTLHQISALFGQAFLSAANMRTGLKGFEKTGIWPNNINVFTDADYLPAAVTDIPLVEAQATRLESQNLAIVENINVIISENVTENSVTDIPLVEAPTAGLENQDSAMVENIPVVISENIVEHSVINDNSPPRIPLALIEHTRNTPVENEPKPGCSWMPHNNYPGNPPMNPLKTNVFQYLSPEQIMPIPKVKVGQKRTARKRGKTAILTASPYKTELEESAKKVQKANEAKKDRAKRKLVQKETNTKGKGRAVVSKKMKKPEKKRKKTIDEEDSSEEEDVNCLYCNDQYSKSIEGWCSCMLCKKWAHNSCAGIDSDDDDQLICDLCKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271015; iTF_00271016; iTF_00271017; iTF_00271018; iTF_00271023; iTF_00268119; iTF_00268120; iTF_00056473; iTF_00268122; iTF_00272414; iTF_00268127; iTF_00271009; iTF_00271010; iTF_00271011; iTF_00271012; iTF_00271013; iTF_00268116; iTF_00272415;
- 90% Identity
- iTF_00271015; iTF_00271016; iTF_00271017; iTF_00271018; iTF_00271023; iTF_00268119; iTF_00056473; iTF_00268122; iTF_00272414; iTF_00268127; iTF_00271010; iTF_00271011; iTF_00271012; iTF_00271013; iTF_00268116; iTF_00268120; iTF_00272415;
- 80% Identity
- -