Cnig006839.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- pol
- Assembly
- GCA_958510845.1
- Location
- OY294028.1:78579201-78595705[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3e-14 3e-11 43.7 0.0 2 34 19 51 18 54 0.94 2 2 9.6 5.5e+03 -2.0 0.0 25 31 298 304 291 304 0.73
Sequence Information
- Coding Sequence
- ATGCCTAGAACCTATACGACCCCACTGGGAGCTAAGAAAAGAAGCAATTATAGTAAAGATATATTTATAGAAGCATTGCAACATGTGCGAAATAAACAAATGACCTTGAGAGAAGCCCAAGATGTCTACGGAATCCCAAAATCTACTTTGCAAGAAGAACAAATGTTTATCGATGTTATTATAGTTGCATCTGAATGGGGCTACCCCTTTGAAAAAATCGATATAAGACTTCTAGTAAAAGGTTATCTAGAAAACCTTGGCCGCAGAGAACCACGATTTAAAGATAACTTTCCTGGTGCAGACTGTCAGAGAGTCACCGATTTCGATTGGACTGACACAATAAGCCAACCACCGACTGAGGCCAACTGGGAAATTGCTAAGAAGGTTGTGAATAAGACCAAAacggcatgggccatcaaatcCTTTAGCTCCTTCAAATCGCCCGGACCTGACGGGGTACTTCCAGCCGtacttcagtggggtctggatCACGTGCTCAATCATCTGGTGCTAGTGTTCCAGGCGTGCATTGCACACGGATACACACCGAAGGAATGGCGCAAGGTTAAAGTTATCTTTATACCAAAACCAGGTAGAGGCGACTACTCCCTGGCAAAATCTTTTAGACCAATCAGTTTAACTTTGTTTTTCctgaaaacgttagaaaaactgTGCGACAGAGAGATACTTGATACGGTTCTGATGCACAGACCACTACACGTAAACCAGCACTCGTATATCCCGGGGAGATCTACTGAGACCGCTCTACACAAGGTGGCAGAGCGCGTCGAAAGGTCACTGGGCCAAAAAGAATCCACCCTAGGAGCGTTCATTGACATCGAAGGGGCCTTTGACAAAACCACTtttgaaagtataaatgcaGCGCTATGCCAATACGGTGTTCCCACGACCATTGCCAACTGGATCAGTTTTATACTGAAGTGGCGAGACGTGGAGGTTAGTGTCGGTGACATAAAGATTAAAGGTGTTGTGACTAGAGGCTGTCCTCAGGGGTAA
- Protein Sequence
- MPRTYTTPLGAKKRSNYSKDIFIEALQHVRNKQMTLREAQDVYGIPKSTLQEEQMFIDVIIVASEWGYPFEKIDIRLLVKGYLENLGRREPRFKDNFPGADCQRVTDFDWTDTISQPPTEANWEIAKKVVNKTKTAWAIKSFSSFKSPGPDGVLPAVLQWGLDHVLNHLVLVFQACIAHGYTPKEWRKVKVIFIPKPGRGDYSLAKSFRPISLTLFFLKTLEKLCDREILDTVLMHRPLHVNQHSYIPGRSTETALHKVAERVERSLGQKESTLGAFIDIEGAFDKTTFESINAALCQYGVPTTIANWISFILKWRDVEVSVGDIKIKGVVTRGCPQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -