Clat012474.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720625.1:38948385-38950171[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.01 0.53 11.6 2.8 2 23 128 151 127 151 0.95 2 13 0.063 3.3 9.1 2.2 2 19 227 244 226 246 0.94 3 13 0.0014 0.074 14.3 1.4 2 23 262 283 261 283 0.96 4 13 0.066 3.4 9.1 1.5 3 23 294 315 292 315 0.95 5 13 0.018 0.94 10.8 0.3 2 23 322 343 321 343 0.91 6 13 2.4 1.2e+02 4.1 0.7 1 20 355 374 355 377 0.90 7 13 0.00068 0.035 15.3 2.9 3 23 384 404 383 404 0.97 8 13 9.1e-05 0.0047 18.1 0.5 1 23 409 432 409 432 0.97 9 13 5.5e-05 0.0029 18.7 3.0 1 23 438 460 438 460 0.96 10 13 0.0002 0.01 17.0 0.2 1 23 466 488 466 488 0.98 11 13 0.018 0.91 10.9 7.1 1 23 494 518 494 518 0.98 12 13 0.00027 0.014 16.6 1.9 1 23 524 546 524 546 0.98 13 13 0.00026 0.013 16.6 11.1 1 23 552 574 552 574 0.97
Sequence Information
- Coding Sequence
- ATGGAAGTTACTGTAAGAATTCCACaagacataaataaattttgcagaaCTTGCCTTCAGGTTGCAGacgataattttttctatcatCGTTTGATACAAGATAAACGAGTGACTAACATAAGcacattttttgaaagtgTTACATCATTAAAGATTACCGTTGGGGACGGTTTACCAGAATCAATCTGCGATGATTGCTACGAGTCTTTAGTGGAATCTTACGCCTACAAAAATCGCAGTCACGATTCcgagaaaaagttaaaatctattttagaaaaatgtagtACTAACACTTCAAAGACCGACATCGAAAATGTTCAAGATACTACTGAAGATACCGATTTGGTTAATCGAATCATTATTACCAACCGCGAAGATTTGGAGTGTAAATATGACCATTGTGATTCAATTTTTCCGTCGTATTATCAATTAAGCAGGCACATGTGTGAACATAATGCTACCAAGACAATTTTGGaaagatttttagaaaattctgtTGAGGAAGAAACAACTGTCAGCGAATTTAACGAATCGGACGCATTAGAACTTATTGCGAttcgtaaattaaataacaaaaatgaaattactgTGAACGAACCTGATGAAGAACAAATTACTATCGAACAAAGTGCAGTTCCAAAAATCGTTACCAAACGCCGCCCAATTGTGATCAGAATGACTTGTAAGATTTGTCTTAAAAGGTTTTCTTCTATGAAACAACTTGATAAACATTCGTGTTGTGAACCTTCTTCCAATTTGAACACAATGGACAACTTTCAGAAATCGTGCAGTTTATGTGGGAAAATCTTTACCGATCCTTGTGCTTTAtcgttacattttttaaaacacattGAATCTATCGAGacaagttttttgttttgtgaaatttgtggtCAATTGTTTGATTGCCAGTCAAATTTAGAAGAACATTATAGTAAAAAGCACATAAGCAAATTGGGCTGGAGTTGTACCGAATGTGAGTCTACTTTCACTACGGAAGTTGAATTACTCAAACACAACACGCTGCATTCTTCCTTAACATATGTGCCTCTCGACCAAAATTTTCCATGCGTTTTATGTAGCACAATATGTTTTTCTGAAACTGATTTACTTAAGCATGTACCAACACATTTAgtcgtaaaaaataattgtaaaaaatgtggAGCGACATTCTGCACACAAGAATCATATTATGTGCATTTAAAATCGCATCCTGGTGCTAAATATACTTGCAACATTTGTCGGAAGCCTTTAAACAGCAGAAGCTATTTAAAACTTCACATCGACACTGTACATTTTCCCACTACCACTTTCAAGTGCGAAATATGtgataaagaatttaaaactcTTGATCGACTAAAACGTCACTCTCATGTACACAGCAAGGATAGAACGTACGTTTGTTCTGCTTGCGGATACACCGCATATCACAGTGGCGATCTTCAAGTGCACATGAGGATCCACACCAATGAAAAGCCATTCAAAtgcacttttttaaattgtaaaagtagTTTTATAACATCCAGTCATCTTCACACTCATACCAGGAATCATCTGAAAATACGCCTGTTTAAGTGCACATATTGTCCTGCCGATTTTAACACCGGTcacactttaaaaaaacatttaatgatCCACACTGGCGAACGACCACACTCCTGCAATGTTTGCCATAAATCATTTAGAAGATTGCATCATTTAAAACTTCATATGAAACAACACAACGTTGCATAA
- Protein Sequence
- MEVTVRIPQDINKFCRTCLQVADDNFFYHRLIQDKRVTNISTFFESVTSLKITVGDGLPESICDDCYESLVESYAYKNRSHDSEKKLKSILEKCSTNTSKTDIENVQDTTEDTDLVNRIIITNREDLECKYDHCDSIFPSYYQLSRHMCEHNATKTILERFLENSVEEETTVSEFNESDALELIAIRKLNNKNEITVNEPDEEQITIEQSAVPKIVTKRRPIVIRMTCKICLKRFSSMKQLDKHSCCEPSSNLNTMDNFQKSCSLCGKIFTDPCALSLHFLKHIESIETSFLFCEICGQLFDCQSNLEEHYSKKHISKLGWSCTECESTFTTEVELLKHNTLHSSLTYVPLDQNFPCVLCSTICFSETDLLKHVPTHLVVKNNCKKCGATFCTQESYYVHLKSHPGAKYTCNICRKPLNSRSYLKLHIDTVHFPTTTFKCEICDKEFKTLDRLKRHSHVHSKDRTYVCSACGYTAYHSGDLQVHMRIHTNEKPFKCTFLNCKSSFITSSHLHTHTRNHLKIRLFKCTYCPADFNTGHTLKKHLMIHTGERPHSCNVCHKSFRRLHHLKLHMKQHNVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00269031;
- 90% Identity
- iTF_00273054;
- 80% Identity
- -