Clat022790.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720628.1:38526884-38528359[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0026 0.14 13.5 0.4 1 23 95 117 95 117 0.97 2 14 0.0065 0.34 12.2 1.0 3 23 125 145 123 145 0.98 3 14 2e-05 0.001 20.1 0.4 3 23 153 173 151 173 0.98 4 14 0.0016 0.081 14.2 4.2 1 23 180 203 180 203 0.97 5 14 0.0017 0.087 14.1 2.4 1 23 209 231 209 231 0.97 6 14 0.0012 0.06 14.6 0.1 1 23 237 259 237 259 0.98 7 14 0.017 0.9 10.9 1.0 3 23 267 288 265 288 0.95 8 14 0.053 2.8 9.3 3.7 1 23 298 320 298 320 0.96 9 14 0.00014 0.0071 17.5 1.2 1 23 326 348 326 348 0.98 10 14 0.0012 0.061 14.6 1.6 1 23 354 376 354 376 0.97 11 14 0.019 1 10.7 0.6 1 23 382 404 382 404 0.97 12 14 0.03 1.6 10.1 1.1 1 23 410 432 410 432 0.96 13 14 0.028 1.5 10.2 1.5 1 23 438 460 438 460 0.98 14 14 0.0012 0.065 14.5 3.2 1 23 466 488 466 488 0.97
Sequence Information
- Coding Sequence
- ATGGAAGAAGTTGAGCGTTCAGAAGAGTTCCacgaaataaaagaagaaattggggaagatataaaattcaatatcaaAGACGAGAGGCCTTTTGAACTCGGCAAATCGCTTAAAGAAGAAGTGAAGTTCAGCTTGGAAAATTTGCATCATTCAATTGATATTAAGGAAGAAACTCCCGTGGATCGGCATGTAGAGTCTGAAATTCAAGAATGTAGCAAAAAATTCACTCGGGAATTGAATACTACACCGGAGAAGGTAACTGCTCCCGTTGGCTTGAAATCTTTTGCGTGCAAAATTTGTGACTTCAAAAGTGCATACCGGGTGTCTCTGAGAGATCACTTAAAAATCCATTCCGGTGAGAAGCCATTCGGGTGTGATCTCTGCGACTACAAAAGTTCGGTCAAGCGAAACATAACCCGGCATATGACGACCCATACCGGGGAAAAACCCTTTGGCTGCGAAGTCTGTGATCTGAAATTTACACGAAAAGACGCTTTGAAAAATCATGTCAAGGTGCACACTGGCTCCAAGTCGGTTTTTACTTGTGAATTCTGCGACTTGAAGTATTCGTTGAAGCACAATTTAAAACAGCACATCACGAAAACTCATAccagtgaaaatttattttcgtgtgATGTCTGTGTCTTTCGCTGTTCCAAAAAATACGATTTGAAGCAGCATATGGCAATCCACACCGGCGAGAAATCTTTCTCGTGTGAGATTTGTGACTTTCAAACTGCGTATCGAGGATCTTTGATCGACCATCTGAGAATCCACACTGGGGAAAAGCCGTTTGGGTGCACAATTTGTGACTTCAAAACCGCTCGTAAGCGTAGCCTCCGGGATCATTCGATGAAAGTTCACTCCGTCAAGCATATCGGGGAGGTATGGTTTTACTGCGAAATATGTTCCTACAAGAGCTTCTATAAACAACGTTTGGAAAGGCATACGAaaactcataccggcgagaaagAGTTCCAATGTGCACTGTGCGATTTCAAAAGTGCTCggaaggaaaatttaaaaaatcatttaaaaagtcaCACCGATCAGAGGCAGTTTGCCTGCGAAATATGCGAATTCAAATGTTCGGtcttgaaaaacttaaaacagCATATGGTAACTCACGCTGCAGAGAAATCCTTCGCATGTGAATCCTGCGACTTTAAAAGTGCATACAAGAGATCGTTGAGAAATCACGTAATGATCCACTCGGGTGAGAAACCGTTCGCCTgtacaatttgtaattataaaagtgTGTTTCGGCAAAGTTTGAGAGACCATTCGAAAGTGCATACTGGCGAGAAAGACTACGCTTGTCAAATATGCCCCTTTCGATGTTCGAtctctaaaattttgaaacggcACATGATAACCCACATCGGAGGGGAATCGTTTGCCTGCGAAATATGCCcttataaatgtttatataAGCAAAGCTTGAAAAGGCACATGAGGACTCATACCCATGACTAA
- Protein Sequence
- MEEVERSEEFHEIKEEIGEDIKFNIKDERPFELGKSLKEEVKFSLENLHHSIDIKEETPVDRHVESEIQECSKKFTRELNTTPEKVTAPVGLKSFACKICDFKSAYRVSLRDHLKIHSGEKPFGCDLCDYKSSVKRNITRHMTTHTGEKPFGCEVCDLKFTRKDALKNHVKVHTGSKSVFTCEFCDLKYSLKHNLKQHITKTHTSENLFSCDVCVFRCSKKYDLKQHMAIHTGEKSFSCEICDFQTAYRGSLIDHLRIHTGEKPFGCTICDFKTARKRSLRDHSMKVHSVKHIGEVWFYCEICSYKSFYKQRLERHTKTHTGEKEFQCALCDFKSARKENLKNHLKSHTDQRQFACEICEFKCSVLKNLKQHMVTHAAEKSFACESCDFKSAYKRSLRNHVMIHSGEKPFACTICNYKSVFRQSLRDHSKVHTGEKDYACQICPFRCSISKILKRHMITHIGGESFACEICPYKCLYKQSLKRHMRTHTHD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00269048;
- 90% Identity
- -
- 80% Identity
- -