Clat013829.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720626.1:7893896-7901205[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.6 1.9e+02 3.6 2.7 2 20 585 603 584 605 0.92 2 18 8.4 4.4e+02 2.4 6.6 1 23 634 657 634 657 0.96 3 18 4 2.1e+02 3.4 3.7 1 19 692 710 692 715 0.88 4 18 7e-05 0.0037 18.4 2.7 2 23 801 823 800 823 0.96 5 18 0.11 5.5 8.4 0.3 2 23 831 853 830 853 0.89 6 18 0.00035 0.018 16.2 0.2 1 23 879 901 879 901 0.98 7 18 0.001 0.052 14.8 0.4 3 23 906 926 905 926 0.97 8 18 0.00015 0.0076 17.4 0.6 2 23 951 972 950 972 0.92 9 18 2.2 1.2e+02 4.2 3.3 1 23 997 1019 997 1020 0.94 10 18 0.034 1.8 10.0 1.6 2 23 1032 1053 1031 1053 0.98 11 18 4.6e-05 0.0024 19.0 5.5 1 23 1083 1105 1083 1105 0.99 12 18 0.86 44 5.6 0.8 3 23 1130 1150 1128 1150 0.97 13 18 5.2e-05 0.0027 18.8 0.2 1 23 1185 1207 1185 1207 0.95 14 18 0.0021 0.11 13.8 0.1 1 23 1239 1262 1239 1262 0.95 15 18 0.00076 0.04 15.2 1.1 3 23 1274 1294 1272 1294 0.96 16 18 6e-05 0.0031 18.6 1.1 1 23 1306 1328 1306 1329 0.95 17 18 2.3e-05 0.0012 19.9 1.4 1 23 1337 1359 1337 1359 0.99 18 18 0.042 2.2 9.7 0.1 1 23 1379 1402 1379 1402 0.95
Sequence Information
- Coding Sequence
- ATGGGTTACGAAAATGAACAGAAAAAACATTTGCAATTACTTCAAGAAACAGATACCTATATAACAGAATATGATGACGACGAAGATGAAATTGTCGAAGAGAACTTTGTGGAAGAACGCGAAACAGATAGTGAGTCAGAACAAGAACTCTTGTCTGAaatagaagaagaagaagaagaacccAAAATAAAACGTGTGCGAGTCGTGAGAGAtcctttatattatattggtcGTGATAAAATTTCCTGGTGGAAGAAGCAAGTTAGTACTTCAGAACGTGTTAGAATTTCATTTGACAATATTCATTTACCCGGAGTAAAAGGCCCTgctaaaaaactaaaatcagAATTTGATCTTTGGAGTTGCTTTATGGGAAGCGatctactaaatattatagtagagagtacaaataaaaacatcgctaatgcaaattatgatgtTTCAAATAAAACGGCACATTACACTGATTTGGTAGAGATTAAAGCTTTGTTgggattattatatttatctgGACTCAAAAAAACAAACCATTTAAACCTTACAGATTTATGGAAAACAAATGGTACTGCAATCGAATTGTTTAGTTTATCTATGTCTTTGCCAAGATTTCGTATGTTGTTACGTCATCTGAGGTTTGAAGATAACGAAATATGTTTAGAAAGAACTAAATTTGACAAATTGGCTCCAATTCGaaagttatttgaaaagtttaatttaaattgccaGGAACATTATTCTTTATCTGAATATGTTACAATTGACGAGAAACTAGAATCTTTCAAAGGCCGGTGCAGCTTTCGCCAATATATACCAAGCAAGCCTAACAAATatgggttaaaaatttttgcacttgcagatgcaaaaactttttacaCTGCTAAGTTAGAAGTATATGTTGGTCAACAGCCTAAAGGTCCTTATAATGTGGATAACAGTGGCTTGGCAATTATTCAACGTCTGTGCGAACCAATTTCAGGCACTAAAAGAAATTTGACCATTGACAATTGGTTTACCAGCAAACAATTGGCTGACAAATTACTCGACGACCATCAAATAACAATGGTGGGTTCCATAAAAAACACCAAACCCGAAATACCCAAAGAATTTGTTGAAGGGAAAACTCGGCCAGTTTCGTCAAGCATGTTTGCGTTTCAAGAACGCTGTACTGTGATGTCTTATGTAcccaaagaaaataaaaatgttctcTTAATATCTACAAAGCACCATGATGACGCGATCGATCCCCAAACAGGAGCACCTGAAATGGTCACATTTTATAACATGACCAAAAATGGCGTAGAAATGGTAGATAAGCTATGTGCATCGTATAACACAGCAAGAGCTACTCGAAGATGGTCCATGGCCATCTTCTACAGTCTGTTAAATATAGCAGCAATTAATGcatttattatgtataatgcAAACAATGCAGgTATGCCCAATAATCAAGACATATCAAATATGGGCGATTTGTCCATTAATGGTATGTCGTCCAACGAAGAAACTGAATtcgaaaaaatacaatttgcaGCCGAATTGCGTCTACAACAACGTCCAATTAGTTTAAATCTGATGAAcaattcagaaaatatttcttcCCTCACAAATGTCGAAGTTAGGTATTTGGAAAAGGCTCGAGAGATTGTAAAAATGGCTGAATCATTGACTTGCACTTGCCATAAAAAAACGTTTCCTGAATATAAAGACCTGTTTGTTCATTTAGAAAACCAACGCACTTGGTTTGCGATGTTAACTTGTTACAATTGTTTGACAACGTTCGGCGATAAATCTACATATCTGAAACATTTCTGTCAGTGTGCTAATGACGATTTGGAAAGCCTCAGGCGGTTCGTTAAAGAGCCTGTCAAtcccgaaataaaaattcgtctCTACCAAAACTTTAAATGCGTTAAATGTAACTTTACTTTTGGTTTCCACGAAGATTACTGCGATCACTTTAACGTTAAGCACATAGAGTTTTCACAAGATAATGTACTTAGTTGCGTGTGCTCCGAAGTATTTCACAACgtggaaaatttcaaacagcACTGTTACATTTCCTGCTTTTTGAGTCACTTTTGTGACGTATGCTTTAAGGACTTTTCGACTATAGAAGAATTTAGGTTACACTGTGAAAGAGTTCACGACGATGCCGAAGGTGAAACTATTGACTCTTACGACACCTATCTCAAACGTGAGTTCGGAAGCGTCGACGAAAATGAACCATCAAACAGACGATCTTTACCTCCCGAATTTCGTCAAAACGATGACGAAATGCGTGGGACAAAAAGGCGTCGTACTGTTCAGTTACCAGCTTCTAAGGATTCCGGGAACGCTTCGCGATCCAATATGGTTATTAACCCTCACGCTATTCGTAACATGAAATCGTCAAACCCTTCAACGTGTCCCGATTGTGGAAAACATTATTCGTCCTACCACAACATGTTACGTCACTACAGGATAGCACACGATGCTTcgggaaaaattttaacctgTTCTTACTGTTCCGTCAAATTTAGACTTTTCTCTGAATTGAGAGATCACGAAATAGCAGAACACGCAGAACACACCCAGCAAGCCGAAGTTGATGAAGACGTTGACGTTAAACCTCAAATAACTCAAGAACAAATGAATTTCTCTTGCCCCGAATGTGGAAAGTTATCCAAAACGATAAGCGACTGGAGAACTCACATGGAAACTCATCCAAAAAAGATCTGTTCAGAATGCGATAAACAGTTCACTTTACAAAGTGAACTCGATCAGCACCGCAGCGtccatttgaatattaaagtttACCGCGATGCCAAAACGCAAGATTACAAAAGTACCATGGTCAGTCCTTCctctttaatttgtaaaatttgcgacAAAACTTTCACCACGAAAAACGAATTAAGCGATCACAATCTGCTTCATGAAAGTATGCCAGTTTTGAGTGCACACAATGAGCAATCTGAGTCTGAGGAGAAGCCAGAAGTTAATCGTAAATATAGTTGTATGCAATGCAATAAACATTACGCTAGTTATGGGGGTATTTGGGATCATAATAAGAAGCACCATGGTGGTAAAACAATCGACAATGAATATCCAAAACAATGCACTTACTGCGAAAAAGTCATATCTTCGCGTTGCGGATGGGTTAATCATCTTAGAATGCACGAACGTTTACACGAACAACCAAAACCAACTCCGGTGGAAACACGTCGGCAGAGTAGAAGCAGCACCAATGATGATGGTGAGTCGTATTACACATGCAAGAGATGTTTTAAAgtgttttcgaaaaaatacgATTACAAGAACCACATGAGGAGTCACGGAATTAATTTGTCTTCGAATACTTCAAACAGAAGTAGTACAAAAACTGGAAAGGTTATTAAGACTTACTGGTGCGATGTTTGTCACCAGGCTTGCCCCGGTTATGCCGAATTGCAAGAACACAAAAAAGAACATTTAgATATGGAAGAATTTAATGATCATATGGAGAAGGAACATGAAAAagcacaaataaaacaaattaaacagaCCAACAATGATAAAAACACCGGAAAACGCTTTACTTGTACAGTTTGTAAAAAATCGTTTGACAACGCTTCCGCCTTGGCCTCGCATCAAGGTTGGCATAAAAGAGGCAAGTTTGGCAAGAAGGTTTTGAATCCAAAAGCGAAGGGTTCGTCCAGGATTATTCAGCTTCCGCAGATTCCTGTTTCAAATCCTTACCCTTGCCGAAGTTGCCCGAGAACGTTTGTAAATGAAACCGCCTTACAAATCCACATTTTGGAAACGCACAGAAATATTAACGCGACATTATTGTCGAtgaattgtaataattgtaagataaGTTTTGATTCTAAATCTGCTTTCGATCGTCACATGCAATTACACGAAGTGGTCGAAAGCCAACGGCAACTTAAACCATACCCATGTCAATATTGTAATGCCGGATTTACCAGAAGTGATACATTGAATGCTCACGTGAAACAACATCACAAAGAATTTTACAAcgacatttttaaatgcactTTTTGTGACCGAGTATTTGATAAGCAAAATGCACTTACAATTCATTTGAAAACACACGATCGGCAACGCTTGTCGGGTGAAATTGCATCAAAAGCAAGTGGCAGTAAAAACGTTTACTTTTGTTCAATTTGCAAATTAGGTTTTGCTATTGCCAAAGAATTGAGACAACACGTCGTTACGGCTCAtccgttttga
- Protein Sequence
- MGYENEQKKHLQLLQETDTYITEYDDDEDEIVEENFVEERETDSESEQELLSEIEEEEEEPKIKRVRVVRDPLYYIGRDKISWWKKQVSTSERVRISFDNIHLPGVKGPAKKLKSEFDLWSCFMGSDLLNIIVESTNKNIANANYDVSNKTAHYTDLVEIKALLGLLYLSGLKKTNHLNLTDLWKTNGTAIELFSLSMSLPRFRMLLRHLRFEDNEICLERTKFDKLAPIRKLFEKFNLNCQEHYSLSEYVTIDEKLESFKGRCSFRQYIPSKPNKYGLKIFALADAKTFYTAKLEVYVGQQPKGPYNVDNSGLAIIQRLCEPISGTKRNLTIDNWFTSKQLADKLLDDHQITMVGSIKNTKPEIPKEFVEGKTRPVSSSMFAFQERCTVMSYVPKENKNVLLISTKHHDDAIDPQTGAPEMVTFYNMTKNGVEMVDKLCASYNTARATRRWSMAIFYSLLNIAAINAFIMYNANNAGMPNNQDISNMGDLSINGMSSNEETEFEKIQFAAELRLQQRPISLNLMNNSENISSLTNVEVRYLEKAREIVKMAESLTCTCHKKTFPEYKDLFVHLENQRTWFAMLTCYNCLTTFGDKSTYLKHFCQCANDDLESLRRFVKEPVNPEIKIRLYQNFKCVKCNFTFGFHEDYCDHFNVKHIEFSQDNVLSCVCSEVFHNVENFKQHCYISCFLSHFCDVCFKDFSTIEEFRLHCERVHDDAEGETIDSYDTYLKREFGSVDENEPSNRRSLPPEFRQNDDEMRGTKRRRTVQLPASKDSGNASRSNMVINPHAIRNMKSSNPSTCPDCGKHYSSYHNMLRHYRIAHDASGKILTCSYCSVKFRLFSELRDHEIAEHAEHTQQAEVDEDVDVKPQITQEQMNFSCPECGKLSKTISDWRTHMETHPKKICSECDKQFTLQSELDQHRSVHLNIKVYRDAKTQDYKSTMVSPSSLICKICDKTFTTKNELSDHNLLHESMPVLSAHNEQSESEEKPEVNRKYSCMQCNKHYASYGGIWDHNKKHHGGKTIDNEYPKQCTYCEKVISSRCGWVNHLRMHERLHEQPKPTPVETRRQSRSSTNDDGESYYTCKRCFKVFSKKYDYKNHMRSHGINLSSNTSNRSSTKTGKVIKTYWCDVCHQACPGYAELQEHKKEHLDMEEFNDHMEKEHEKAQIKQIKQTNNDKNTGKRFTCTVCKKSFDNASALASHQGWHKRGKFGKKVLNPKAKGSSRIIQLPQIPVSNPYPCRSCPRTFVNETALQIHILETHRNINATLLSMNCNNCKISFDSKSAFDRHMQLHEVVESQRQLKPYPCQYCNAGFTRSDTLNAHVKQHHKEFYNDIFKCTFCDRVFDKQNALTIHLKTHDRQRLSGEIASKASGSKNVYFCSICKLGFAIAKELRQHVVTAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -