Clat018808.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720628.1:6389108-6390806[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 0.57 11.5 0.7 1 23 85 107 85 107 0.96 2 13 3.9e-05 0.002 19.2 2.7 1 23 113 135 113 135 0.97 3 13 0.0006 0.031 15.5 0.9 1 23 141 163 141 163 0.98 4 13 0.00011 0.0056 17.8 0.6 1 23 169 191 169 191 0.97 5 13 2.1e-05 0.0011 20.0 2.6 1 23 197 219 197 219 0.98 6 13 0.044 2.3 9.6 3.1 1 23 225 247 225 247 0.97 7 13 0.00051 0.026 15.7 0.1 1 23 253 276 253 276 0.97 8 13 0.0038 0.2 12.9 2.7 1 23 280 304 280 304 0.97 9 13 0.0066 0.34 12.2 4.4 1 23 310 332 310 332 0.98 10 13 3.6e-05 0.0019 19.3 0.6 1 23 338 360 338 360 0.97 11 13 0.037 1.9 9.9 2.1 1 23 366 388 366 388 0.94 12 13 0.00015 0.0078 17.4 4.4 1 23 394 416 394 416 0.98 13 13 0.0013 0.066 14.5 3.8 1 23 422 444 422 444 0.97
Sequence Information
- Coding Sequence
- ATGGAAGCTGAATTTATTTCCGCAATTGAAAAGGTCATAATTAAGCaagaaattgatgaaaatataaCGGATACGCCTGACATAATATCAGaAGCTGATTTGActgcagaaataaaaatagaaaatattcacTACAATCCAGAAAATTTAGTAAGCCACTCGGTGTATATCAAGGAAGAAAAGACGGATGAAACGGAAGCTCCCAAACCAAAACGAGAAGTTCCTATACCTACCCTGGATTATAAAAAACCTTATTTGTGCGAATTTTGTGATTATACAAATATACGAAAGATTGAATTGAGACGGCACTTAAAAGTCCACACCGGAGACAAACCGTTTGCGTGCGAATTTTGTGGATTTAAATGTGAAAGGAAAAGTAAGTTGGAACGGCACATAAGAGTTCATACCGGCGAAAAACCATACGCTTGCGAGTTTTGTGATCACACAACCGCCCAAAAAGGTTCACTGCTGCAGCACTTAAAAATTCACACAGGAGAAAAACCGTTTGCTTGTGGAATTTGCGATTATAGAACATCTCAGAAAAGTCGTTTACGTGAACACGCAAGAACTCACACCGGAGAAAGACCCTTCCCGTGCGGGTTTTGCGATCACAAAGCCAcatcaaaaagtaatttgcAACGGCATTTAAGAACGCATGCCAACGAAAAACCGTTTGCGTGTGATTTGtgtgattttaaaacaaaacagagATGTATTTTACAGAGGCACATAAGAAGTCACACGGGCGAGAAGCCCTACGAGTGCGATGTTTGTGGTCTTAAAATCGCAGATCGGATCAGCTTGCGGAGACACATTTTAAGGATGCACACAGGGTCGTTTGAATGCGAGAAtgaaaattgtgattttaagTGTTCTAATAAACGCGATTTACAAGAACACTTAAAAAATCACctgatagaaaaattattttactgtgAGTATTGCGAATATAGCACACCAAAAGAATGTCACTTACAACGACACCTGAGCGTTCATACGGGCGATAAGCCGTTTGCATGTGAAATATGCGACTGTAAATATGCAGACAAAGGCGGCTTACGGcggcatttaaaaattcacaccACGGAACAACCTTTTGAATGTATTCTATGCGATTACAAATGTGTAGAAAAAAGTCGGTTGCAGCGTCATCTAAAAATTCACACTACGGAAAGACCATATTCCTGCGAAAtgtgcgattataaatgtaaagATAAAAACTCGTTCCAAATACACATGAGAAATCATTCGGGAGAAACGCCGTTTGCGTGCGAAATTTGTGAGTTTAAGTGTTCGGACAAACGTCGTCTGCGACGACATATAAAAAGACACGGAAGTTAG
- Protein Sequence
- MEAEFISAIEKVIIKQEIDENITDTPDIISEADLTAEIKIENIHYNPENLVSHSVYIKEEKTDETEAPKPKREVPIPTLDYKKPYLCEFCDYTNIRKIELRRHLKVHTGDKPFACEFCGFKCERKSKLERHIRVHTGEKPYACEFCDHTTAQKGSLLQHLKIHTGEKPFACGICDYRTSQKSRLREHARTHTGERPFPCGFCDHKATSKSNLQRHLRTHANEKPFACDLCDFKTKQRCILQRHIRSHTGEKPYECDVCGLKIADRISLRRHILRMHTGSFECENENCDFKCSNKRDLQEHLKNHLIEKLFYCEYCEYSTPKECHLQRHLSVHTGDKPFACEICDCKYADKGGLRRHLKIHTTEQPFECILCDYKCVEKSRLQRHLKIHTTERPYSCEMCDYKCKDKNSFQIHMRNHSGETPFACEICEFKCSDKRRLRRHIKRHGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294183;
- 90% Identity
- iTF_00268941;
- 80% Identity
- -